AT2G21860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : violaxanthin de-epoxidase-related | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
violaxanthin de-epoxidase-related; BEST Arabidopsis thaliana protein match is: non-photochemical quenching 1 (TAIR:AT1G08550.2); Has 151 Blast hits to 151 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:9318333..9319990 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59290.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.88 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||
| Length | 522 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAIPLKAPS LPGTRECSPF LNRFVTHQPV NFIRKFHPSL DEASFSRRGR TTVVRVLETE KSTKIEKPEP PVKLIALVGK GEVSPLKSTS WEEVMLHTAR 101: RLKWVDEGYE MLVFDDEIVS SNDQRAMNLT QELNQTDILV VVAVNNSESV NWIQTNSKNV KNMICFESSP NLMNRLGGTD VGSVNKDKEV TEVVKTVGDA 201: WERRNSDDIR FCLLVIINAY IRPVPVLQNL RSKGFSTLSC MVKNCGPQIL NCLLDPNCRK ALQCLNQCSP VDQVCSYRCI ASYEGPYFEA FSLCVLQKHN 301: CLELDAKIPE KPYVPPMTSF RGKELCHDTA EDLFVGWLGE LEWSWRVVAG QNPAYDQFPC QYQLFYRGKG KSSFWYEPVF QVRTLEEKLV WRRRRYSVKR 401: GKIPATFRFS VLDNGVVSNE FWTIVDVSDD LSWGLFHYHG AARVAGQSYT GAVLVTPDGS YPAEKDKERL QSALEKCGIK EWELFAVDNC SCENPPLGIP 501: QGSRLHSRIS IIEEPDSEEK FN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)