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AT2G21830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.925
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G21850.1); Has 2141 Blast hits to 715 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 4; Plants - 2011; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JBNCeggNOG:ENOG411164YEMBL:AC007019EMBL:AY059865EMBL:BT003365EMBL:CP002685EnsemblPlants:AT2G21830
EnsemblPlants:AT2G21830.1entrez:816719GeneID:816719GO:GO:0005622GO:GO:0008270GO:GO:0035556GO:GO:0047134
Gramene:AT2G21830.1hmmpanther:PTHR32410hmmpanther:PTHR32410:SF152HOGENOM:HOG000120689IntAct:Q9SJ16InterPro:IPR001965InterPro:IPR002219
InterPro:IPR004146KEGG:ath:AT2G21830OMA:LMHESHEPfam:PF03107Pfam:PF07649Pfscan:PS50081PhylomeDB:Q9SJ16
PIR:F84605PROSITE:PS50081Proteomes:UP000006548RefSeq:NP_565519.1SMART:SM00109SMART:SM00249SMR:Q9SJ16
STRING:3702.AT2G21830.1SUPFAM:SSF57889TAIR:AT2G21830UniGene:At.26605UniProt:Q9SJ16
Coordinates (TAIR10) chr2:+:9303821..9305700
Molecular Weight (calculated) 65593.40 Da
IEP (calculated) 7.18
GRAVY (calculated) -0.23
Length 569 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKLEHFSHS CPLTSPEIVA EGICNICFQD QVVEYACKPC NFDICKTCSK LPQKVSHGFH SDHPLEFSLF QYDRKPGYIV CSCCGNMSSC SFYECKECEI
101: YLDLGCALLK NVFTGWDVRE MLHYSHEHLL RRCKPGQDAR GSCLLCELPL SPSSICYGCV YCYSFLHERC LDLPTEIRHP VHLEHPLRRL DYIRSGGRTF
201: CGACREKIDS VPFGCLECGF YIHMRCADSF LRCLMHESHE HKLFYVSSNA KEHFGRNNCC QICLGAVVSS LDSYYHCIEC ELEFHFECLG ISKTISKRSC
301: HIHPLVCKRV REEDDSLEYC GVCETLIHAG HHVYSCEECD FLGHIECILR EKEPSPLYLK DLYSCVEDVK RATNQEDYET NKVMVHDINH NHVVTSIDMC
401: ELEGKEHCHI CEKEILGNPW KCETCNFVTH NFCVELGKPS RHRFHWNHLL TLMPKPVATD MTSCKSCRED IKGFNLFCRI CNFIIHVSCA MKGKRFLGMT
501: GPKVVGTWRG RCLGGKHRMV QVMFPRSYQK VCIICHERVL GKAVSCMECE TIYHLRCIDR HRIKDRDSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)