AT2G21680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.901 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G29810.1); Has 2125 Blast hits to 1978 proteins in 129 species: Archae - 2; Bacteria - 88; Metazoa - 967; Fungi - 0; Plants - 1004; Viruses - 10; Other Eukaryotes - 54 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:9267730..9269019 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48784.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.13 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||
| Length | 429 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVLISETSDD GSTGGDHQIK KPKKEEDRNK KLKEKVQVSL PIPEELILRC FLLVRRCHHP SLSLVCRSFH SLMSKLYDDR LRLGYTENVL YAYVGFPPVE 101: NPSWYILHRK PYRNLPNTIS LKLCKIDSLP PMPWGSTVVT IGSDIYVIGG RVGEKLLEDV GVGYNKPISG GRRGETSIRG GHAGERRISD VTHINCRFHE 201: YRSLPSMKMA RCRAAAGVID GKIYVIGGRK VRTSDWVEVF DLKKQSWSSV PGPYPEAFGR GEFLTYAVMK EKIYCLDLTR NIHIYDPKES KWESWTHGPL 301: SASWNDSSCV VDNLLFCINT SVYFLGWPIK IYDPEKKTWF YLQGLQGFPA NGLFVDGYKM ANFGGKLVIL SADVHRLRRY DCRKREIWCI EIAWERKEDG 401: TFWGKVESVA VVLTPAKTTS VDICGTVTV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)