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AT2G21590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glucose-1-phosphate adenylyltransferase family protein
Curator
Summary (TAIR10)
Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.
Computational
Description (TAIR10)
APL4; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Glucose-1-phosphate adenylyltransferase family protein (TAIR:AT4G39210.1); Has 8265 Blast hits to 8149 proteins in 1719 species: Archae - 344; Bacteria - 5333; Metazoa - 20; Fungi - 9; Plants - 1699; Viruses - 0; Other Eukaryotes - 860 (source: NCBI BLink).
Protein Annotations
EC:2.7.7.27eggNOG:COG0448eggNOG:ENOG410IMYMEMBL:AK317139EMBL:CP002685EnsemblPlants:AT2G21590EnsemblPlants:AT2G21590.1
EnsemblPlants:AT2G21590.2entrez:816697ExpressionAtlas:B9DGF8Gene3D:3.90.550.10GeneID:816697GO:GO:0005524GO:GO:0005978
GO:GO:0008878GO:GO:0009507GO:GO:0019252Gramene:AT2G21590.1Gramene:AT2G21590.2gramene_pathway:2.7.7.27gramene_pathway:PWY-622
InterPro:IPR005835InterPro:IPR005836InterPro:IPR011004InterPro:IPR011831InterPro:IPR029044KEGG:00500+2.7.7.27KEGG:00520+2.7.7.27
KEGG:ath:AT2G21590KO:K00975OMA:CRMVDSIPaxDb:B9DGF8Pfam:PF00483Pfam:Q9SIK1PhylomeDB:B9DGF8
PRIDE:B9DGF8PROSITE:PS00808PROSITE:PS00809PROSITE:PS00810ProteinModelPortal:B9DGF8RefSeq:NP_001031391.1RefSeq:NP_179753.1
scanprosite:PS00808scanprosite:PS00809scanprosite:PS00810SMR:B9DGF8SMR:Q9SIK1STRING:3702.AT2G21590.1SUPFAM:SSF51161
SUPFAM:SSF53448TAIR:AT2G21590tair10-symbols:APL4TIGRfam:TIGR02091TIGRFAMs:TIGR02091UniGene:At.28357UniPathway:UPA00152
unipathway:UPA00164UniProt:B9DGF8UniProt:Q9SIK1
Coordinates (TAIR10) chr2:+:9239362..9242150
Molecular Weight (calculated) 58208.60 Da
IEP (calculated) 8.23
GRAVY (calculated) -0.26
Length 523 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSSYSFALG TSSSILPKLS FRNVENRFYG EKNNNNGLCK RFGSDLGSKK FRNQKFKHGV VYAVATSDNP KKAMTVKTSM FERRKVDPQN VAAIILGGGN
101: GAKLFPLTMR AATPAVPVGG CYRLIDIPMS NCINSCINKI FVLTQFNSAS LNRHLARTYF GNGINFGGGF VEVLAATQTP GEAGKKWFQG TADAVRKFLW
201: VFEDAKNRNI ENILILSGDH LYRMNYMDFV QSHVDSNADI TLSCAPVSES RASNFGLVKI DRGGRVIHFS EKPTGVDLKS MQTDTTMLGL SHQEATDSPY
301: IASMGVYCFK TEALLNLLTR QYPSSNDFGS EVIPAAIRDH DVQGYIFRDY WEDIGTIKTF YEANLALVEE RPKFEFYDPE TPFYTSPRFL PPTKAEKCRM
401: VDSIISHGCF LRECSVQRSI IGERSRLDYG VELQDTLMLG ADYYQTESEI ASLLAEGKVP IGIGKDTKIR KCIIDKNAKI GKNVIIMNKG DVQEADRPEE
501: GFYIRSGITV IVEKATIQDG TVI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)