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AT2G21440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 28 (TAIR:AT5G18810.1); Has 993074 Blast hits to 495169 proteins in 22089 species: Archae - 21796; Bacteria - 609929; Metazoa - 180707; Fungi - 26716; Plants - 57391; Viruses - 71662; Other Eukaryotes - 24873 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSHPeggNOG:KOG0127EMBL:AC006841EMBL:AY059760EMBL:BT003003EMBL:CP002685EnsemblPlants:AT2G21440
EnsemblPlants:AT2G21440.1entrez:816683Gene3D:3.30.70.330GeneID:816683GO:GO:0000166GO:GO:0003676Gramene:AT2G21440.1
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF411HOGENOM:HOG000240498InterPro:IPR000504InterPro:IPR003954InterPro:IPR012677KEGG:ath:AT2G21440
KO:K14573OMA:WANNNPEPfam:PF00076Pfscan:PS50102PhylomeDB:Q9SJT4PIR:C84601PROSITE:PS50102
Proteomes:UP000006548RefSeq:NP_565513.1SMART:SM00360SMART:SM00361SMR:Q9SJT4STRING:3702.AT2G21440.1SUPFAM:SSF54928
TAIR:AT2G21440UniGene:At.14070UniProt:Q9SJT4
Coordinates (TAIR10) chr2:-:9173712..9179065
Molecular Weight (calculated) 112072.00 Da
IEP (calculated) 10.10
GRAVY (calculated) -0.93
Length 1003 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGKNKRERKD GEEKSPHAAA TVCVSGLPYS ITNAQLEEAF SEVGPVRRCF LVTNKGSDEH RGFAFVKFAL QEDVNRAIEL KNGSTVGGRR ITVKQAAHRP
0101: SLQERRTKAA EGISVPDNSQ GQSDKDTSIP ETDEKVSPPE KKLEKPVERK KVEKPIERKQ VEKPVERKKA EKPIELKQVE KPFERKQVEK PVERKQVEKP
0201: VERKQVEKPI ERKRPTKLHV DLPDKETCSD KQRVARTVIF GGLANAEMAE VVHSRVKEIG TVCSVRYPLP KEELQQNGLT QDGCRAEASA VLFTSVKSAC
0301: AAVAKLHQTE VKGNLIWARQ LGGEGSKAQK WKLIIRNLPF QAKPSDIKVV FSAVGFVWDV FIPKNFETGL PKGFAFVKFT CKKDAANAIK KFNGHMFGKR
0401: PIAVDWAVPK NIYNGAADAT TASADGDKEG SDGDSENSSV DLEEVDEAVE SHPPPGDDTD DDEDGSNKLT ESDALDKDVG TDMNFEDEAD VARKVLKNLL
0501: ASSKGSTATP EGETEESDKS KLKSSSTKPV ADSSGVSEPL KSGKTKVVAP KETQDNDDFE RTLFIRNLPF DVTKEEVKQR FTVFGEVESL SLVLHKVTKR
0601: PEGTAFVKFK TADASVAAIS AADTASGVGV LLKGRQLNVM RAVGKKAAKD IELKKTEEKN VDHRNLYLAK EGQILDDTPA AEGVSAEDMD KRRRLHENKM
0701: KMLQSPNFHV SRTRLVIYNL PKSMNPKQLN RLLVDAVTSR ATKQKPCIRQ IKFLQNEKKG KVDTKNYSRG VAFVEFTEHE HALVALRVLN NNPETFGPQH
0801: RPVIEFAVDN VQKLKIREAK QQQFQQREKH NESDQQQANG EAQAPDNKYK RKTREGDNTG PRKENAARFK KGPREESKEE AKSNIAVKDN AAEKKRPIRT
0901: QEKPSSNKKG QLMRQKETTE KPDPKISKDL SEPRKRKFGE DRGEENRNGQ RKRKKQGQGQ GGAEVVDKLD LLIEKYRSKF SQSSAKTGPQ KQSSGQVRRW
1001: FES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)