suba logo
AT2G21320.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : B-box zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-box zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger family protein (TAIR:AT4G38960.1); Has 1943 Blast hits to 1369 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 0; Plants - 1819; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWS4eggNOG:ENOG410Y2NNEMBL:AC006841EMBL:AY060570EMBL:AY125573EMBL:CP002685EnsemblPlants:AT2G21320
EnsemblPlants:AT2G21320.1entrez:816671GeneID:816671Genevisible:Q9SJU5GO:GO:0000989GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0008270GO:GO:0009640GO:GO:0010100GO:GO:0070370GO:GO:0071483
Gramene:AT2G21320.1hmmpanther:PTHR31832hmmpanther:PTHR31832:SF5HOGENOM:HOG000239240InParanoid:Q9SJU5InterPro:IPR000315KEGG:ath:AT2G21320
OMA:DEAALCCPaxDb:Q9SJU5Pfam:PF00643Pfam:Q9SJU5Pfscan:PS50119PhylomeDB:Q9SJU5PIR:H84599
PRO:PR:Q9SJU5PROSITE:PS50119ProteinModelPortal:Q9SJU5Proteomes:UP000006548RefSeq:NP_565507.1SMART:SM00336SMR:Q9SJU5
STRING:3702.AT2G21320.1TAIR:AT2G21320UniGene:At.27367UniProt:Q9SJU5
Coordinates (TAIR10) chr2:+:9126502..9127652
Molecular Weight (calculated) 18892.00 Da
IEP (calculated) 6.10
GRAVY (calculated) -0.59
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MRILCDACES AAAIVFCAAD EAALCCSCDE KVHKCNKLAS RHLRVGLADP SNAPSCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HRRFLLLRQR
101: IEFPGDKPNH ADQLGLRCQK ASSGRGQESN GNGDHDHNMI DLNSNPQRVH EPGSHNQEEG IDVNNANNHE HE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)