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AT2G21270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.990
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin fusion degradation 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin fusion degradation 1 (UFD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT4G38930.2); Has 702 Blast hits to 700 proteins in 221 species: Archae - 8; Bacteria - 2; Metazoa - 164; Fungi - 209; Plants - 127; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5140eggNOG:KOG1816EMBL:AC006841EMBL:AK226526EMBL:BT033134EMBL:CP002685EnsemblPlants:AT2G21270
EnsemblPlants:AT2G21270.1EnsemblPlants:AT2G21270.2entrez:816666ExpressionAtlas:Q9SJV0GeneID:816666GO:GO:0006511Gramene:AT2G21270.1
Gramene:AT2G21270.2hmmpanther:PTHR12555hmmpanther:PTHR12555:SF17InterPro:IPR004854KEGG:ath:AT2G21270KO:K14016PANTHER:PTHR12555
Pfam:PF03152PhylomeDB:Q9SJV0PIR:C84599Proteomes:UP000006548Reactome:R-ATH-110320RefSeq:NP_001031384.1RefSeq:NP_565504.1
SMR:Q9SJV0STRING:3702.AT2G21270.3TAIR:AT2G21270tair10-symbols:UFD1UniGene:At.39582UniProt:Q9SJV0
Coordinates (TAIR10) chr2:+:9108126..9110012
Molecular Weight (calculated) 35324.90 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.54
Length 319 amino acids
Sequence (TAIR10)
(BLAST)
001: MFFDGYHYHG TTFEQSYRCY PASFIDKPQL ESGDKIIMPP SALDRLASLH IDYPMLFELR NAGIERVTHC GVLEFIAEEG MIYMPYWMMQ NLLLQEGDIV
101: RVRNVTLPKG TYVKLQPHTT DFLDISNPKA ILETALRNYS CLTSGDSIMV PYNNKKYFID IVETKPANAI SIIETDCEVD FAPPLDYKEP ERPTAPSAAK
201: GPAKAEEVVD EPEPKFNPFT GSGRRLDGRP LAYEPAPASS SKGKQPVVAN GNGQSSVASS SEKATRAQGK LVFGANGNRA PKEAAPKVGA AKETKKEEQE
301: KKDEPKFQAF SGKKYSLRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)