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AT2G21240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : basic pentacysteine 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic pentacysteine 4 (BPC4); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 5 (TAIR:AT4G38910.2); Has 263 Blast hits to 247 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 40; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:2016eggNOG:ENOG410IIRGeggNOG:ENOG41116WEEMBL:AC007142EMBL:AK229090EMBL:AK317165EMBL:AY084554
EMBL:AY380570EMBL:BT026109EMBL:CP002685EnsemblPlants:AT2G21240EnsemblPlants:AT2G21240.1EnsemblPlants:AT2G21240.2entrez:816663
GeneID:816663Genevisible:Q8S8C6GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009723
GO:GO:0042803GO:GO:0050793Gramene:AT2G21240.1Gramene:AT2G21240.2hmmpanther:PTHR31421hmmpanther:PTHR31421:SF3HOGENOM:HOG000241671
InParanoid:Q8S8C6InterPro:IPR010409iPTMnet:Q8S8C6KEGG:ath:AT2G21240ncoils:CoilOMA:ENGRHKMPANTHER:PTHR31421
PaxDb:Q8S8C6Pfam:PF06217Pfam:Q8S8C6PhylomeDB:Q8S8C6PIR:H84598PRIDE:Q8S8C6PRO:PR:Q8S8C6
Proteomes:UP000006548RefSeq:NP_565503.1RefSeq:NP_850012.1SMART:SM01226STRING:3702.AT2G21240.1TAIR:AT2G21240tair10-symbols:ATBPC4
tair10-symbols:BBRtair10-symbols:BPC4UniGene:At.39586UniProt:Q8S8C6
Coordinates (TAIR10) chr2:-:9101515..9102489
Molecular Weight (calculated) 33308.60 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.78
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MENGGQYDNA RFKPDYFKGA QSMWNMIPQH QIKEQHNALV MNKKIMSILA ERDAAVHERN QAVSAKKEAV AARDEALQQR DKALSERDKA LIERDNAYAA
101: LQHHENSLNF ALSGGKCVDG DDCFGIGEPH KLEVFPLSTI PPEVTNTKVV NKRKKENKQG LSKVKKVGED LNRRVPAPGK KSRTDWDSQD VGLNLVTFDE
201: TTMPVPMCSC TGSTRQCYKW GNGGWQSSCC TTTLSQYPLP QMPNKRHSRM GGRKMSGNVF SRLLSRLSAE GYDLSCPVDL KDYWARHGTN RYITIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)