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AT2G20960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arabidopsis phospholipase-like protein (PEARLI 4) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pEARLI4; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT4G38560.1); Has 15842 Blast hits to 10281 proteins in 873 species: Archae - 33; Bacteria - 1976; Metazoa - 6640; Fungi - 3309; Plants - 1166; Viruses - 359; Other Eukaryotes - 2359 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVZBeggNOG:ENOG41105EWEMBL:AC006234EMBL:AC006264EMBL:AY059813EMBL:BT000010EMBL:CP002685
EnsemblPlants:AT2G20960EnsemblPlants:AT2G20960.1entrez:816630GeneID:816630GO:GO:0003682GO:GO:0007064GO:GO:0010468
Gramene:AT2G20960.1hmmpanther:PTHR21704hmmpanther:PTHR21704:SF19InterPro:IPR007942InterPro:IPR033031KEGG:ath:AT2G20960ncoils:Coil
OMA:RTPIHESPANTHER:PTHR21704Pfam:PF05278PhylomeDB:Q9SKR5PIR:D84595Proteomes:UP000006548RefSeq:NP_179692.1
STRING:3702.AT2G20960.1TAIR:AT2G20960tair10-symbols:pEARLI4UniGene:At.25090UniProt:Q9SKR5
Coordinates (TAIR10) chr2:+:9007089..9009611
Molecular Weight (calculated) 84867.50 Da
IEP (calculated) 9.80
GRAVY (calculated) -1.06
Length 748 amino acids
Sequence (TAIR10)
(BLAST)
001: MELVSGKVVP GCSNAGNPFH ECTAICFERV NSPDVHKKEK KLFGFGKRTP SRDQTPPASP ARGSRSPLAS YFAKKKVESS AESSPSSYDH TNGNFLSRLS
101: PLQGRKIEPS SNVDSLPVSP SLALYSGGDY FARRADQRGD EDDDVSPRPF GTQPKTPEHP LRTPQHRPRT PQHRSAHQED AFSLETRPRT PERRSNTSDT
201: RPRTPIHESA ATGRRPQTPE TRPRTPDHRY ATYDNRPRTP IHESAATERR PQTPETRPRT PEHRSAIPDT RPRTPIHESA ATGRRPQTPE TRPRTAQRRG
301: RSPEFMERSP GPRSKTPEPQ PTYFEPSSRT PKQRSKTPEP SPRIPQTQPM SHRSLDNAAL KMPRTVETRP RTPEHQPRTV ETKPRIHESR PKTAVYGGRS
401: PDHREKISQE MGQRSSHAYN YLGSKAESVY IEKNEESVLL FPELILSPQE RPPSRLITLN HRGYETPNKQ KEHCDEMDDS ASTDDDKFSF VDDHDEHTVS
501: IYAETTSKSG SSEQEEQHKA NNEPPELPDE SQSFSLAEIS RMKGIITNNE IRDVMQSILS ESYVSVGQYK VRASVSTTLQ HILQKHGDIA SGSKLQSLAT
601: RSYYLDMLAS VVFELQTTPL KYLKESRVVE MVAIVKDIES VKIKAGWLKP VLEEIVEAVK HYDEHKMSVV EKEVWERDVL LAKQETEKQV KELGEKEKKI
701: KEWRAKMTEM AAKLGDLDMK RARLHKSFTF LSSKVDKFQG KPLLQGIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)