AT2G20960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Arabidopsis phospholipase-like protein (PEARLI 4) family | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pEARLI4; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT4G38560.1); Has 15842 Blast hits to 10281 proteins in 873 species: Archae - 33; Bacteria - 1976; Metazoa - 6640; Fungi - 3309; Plants - 1166; Viruses - 359; Other Eukaryotes - 2359 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:9007089..9009611 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84867.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.80 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.06 | ||||||||||||||||||||||||||||||||||||
| Length | 748 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELVSGKVVP GCSNAGNPFH ECTAICFERV NSPDVHKKEK KLFGFGKRTP SRDQTPPASP ARGSRSPLAS YFAKKKVESS AESSPSSYDH TNGNFLSRLS 101: PLQGRKIEPS SNVDSLPVSP SLALYSGGDY FARRADQRGD EDDDVSPRPF GTQPKTPEHP LRTPQHRPRT PQHRSAHQED AFSLETRPRT PERRSNTSDT 201: RPRTPIHESA ATGRRPQTPE TRPRTPDHRY ATYDNRPRTP IHESAATERR PQTPETRPRT PEHRSAIPDT RPRTPIHESA ATGRRPQTPE TRPRTAQRRG 301: RSPEFMERSP GPRSKTPEPQ PTYFEPSSRT PKQRSKTPEP SPRIPQTQPM SHRSLDNAAL KMPRTVETRP RTPEHQPRTV ETKPRIHESR PKTAVYGGRS 401: PDHREKISQE MGQRSSHAYN YLGSKAESVY IEKNEESVLL FPELILSPQE RPPSRLITLN HRGYETPNKQ KEHCDEMDDS ASTDDDKFSF VDDHDEHTVS 501: IYAETTSKSG SSEQEEQHKA NNEPPELPDE SQSFSLAEIS RMKGIITNNE IRDVMQSILS ESYVSVGQYK VRASVSTTLQ HILQKHGDIA SGSKLQSLAT 601: RSYYLDMLAS VVFELQTTPL KYLKESRVVE MVAIVKDIES VKIKAGWLKP VLEEIVEAVK HYDEHKMSVV EKEVWERDVL LAKQETEKQV KELGEKEKKI 701: KEWRAKMTEM AAKLGDLDMK RARLHKSFTF LSSKVDKFQG KPLLQGIL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)