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AT2G20930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.724
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SNARE-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sedlin (InterPro:IPR006722), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT1G80500.1); Has 516 Blast hits to 516 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 97; Plants - 87; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111IEZeggNOG:KOG3444EMBL:AC006234EMBL:AK317476EMBL:BT025606EMBL:CP002685EnsemblPlants:AT2G20930
EnsemblPlants:AT2G20930.1entrez:816627GeneID:816627GO:GO:0005737GO:GO:0006888Gramene:AT2G20930.1hmmpanther:PTHR12403
InterPro:IPR006722InterPro:IPR011012KEGG:ath:AT2G20930OMA:MAFCIAVPANTHER:PTHR12403Pfam:PF04628PhylomeDB:Q9SKS7
PIR:A84595PRO:PR:Q9SKS7Proteomes:UP000006548Reactome:R-ATH-204005RefSeq:NP_565493.1SMR:Q9SKS7STRING:3702.AT2G20930.1
SUPFAM:SSF64356TAIR:AT2G20930UniGene:At.39634UniProt:Q9SKS7
Coordinates (TAIR10) chr2:-:9000790..9001656
Molecular Weight (calculated) 15679.80 Da
IEP (calculated) 8.67
GRAVY (calculated) -0.02
Length 140 amino acids
Sequence (TAIR10)
(BLAST)
001: MIVCVAVVGH QNNPLYIQSF TDADDALKLH HIVHCSLDVI EERVNNPKKS GTTLNEAFLG LLYPTVNYKV YGYLTNTKVK FILVTTDLDV RDTDVRSFFR
101: KFHAAYVDAV SNPFHVPGKK ITSRTFAQTV SNIVGSYGLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)