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AT2G20890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19676087 (2009): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:16207701 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : photosystem II reaction center PSB29 protein
Curator
Summary (TAIR10)
Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes. Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely stacked thylakoid membranes). Expression was induced in the light and decreased under dark conditions. G-alpha interaction partner that functions downstream of the plasma membrane–delimited heterotrimeric G-protein (GPA1) in a D-glucose signaling pathway. Localized to both the outer plastid membrane and the stroma. Probably involved in the metabolic pathway that controls the assembly of the PS II complex.
Computational
Description (TAIR10)
photosystem II reaction center PSB29 protein (PSB29); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: in 9 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II biogenesis protein Psp29 (InterPro:IPR017499); Has 330 Blast hits to 330 proteins in 95 species: Archae - 0; Bacteria - 141; Metazoa - 1; Fungi - 0; Plants - 61; Viruses - 6; Other Eukaryotes - 121 (source: NCBI BLink).
Protein Annotations
BioGrid:1976eggNOG:ENOG410IG19eggNOG:ENOG4111FQDEMBL:AC006234EMBL:AY062799EMBL:AY081596EMBL:AY087394
EMBL:AY899908EMBL:CP002685EnsemblPlants:AT2G20890EnsemblPlants:AT2G20890.1entrez:816623GeneID:816623Genevisible:Q9SKT0
GO:GO:0009507GO:GO:0009527GO:GO:0009528GO:GO:0009532GO:GO:0009534GO:GO:0009535GO:GO:0009570
GO:GO:0009707GO:GO:0009941GO:GO:0010027GO:GO:0010182GO:GO:0010207GO:GO:0010319GO:GO:0015996
GO:GO:0016021GO:GO:0045037GO:GO:0045038Gramene:AT2G20890.1HAMAP:MF_01843hmmpanther:PTHR34793hmmpanther:PTHR34793:SF1
HOGENOM:HOG000232762InParanoid:Q9SKT0IntAct:Q9SKT0InterPro:IPR017499KEGG:ath:AT2G20890ncoils:CoilOMA:NETISKC
PaxDb:Q9SKT0Pfam:PF11264Pfam:Q9SKT0PhylomeDB:Q9SKT0PIR:F84594PRIDE:Q9SKT0PRO:PR:Q9SKT0
ProteinModelPortal:Q9SKT0Proteomes:UP000006548RefSeq:NP_565491.1STRING:3702.AT2G20890.1TAIR:AT2G20890tair10-symbols:PSB29tair10-symbols:THF1
TIGRfam:TIGR03060TIGRFAMs:TIGR03060UniGene:At.46381UniGene:At.48498UniProt:Q9SKT0
Coordinates (TAIR10) chr2:+:8987783..8989185
Molecular Weight (calculated) 33797.40 Da
IEP (calculated) 9.56
GRAVY (calculated) -0.39
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATAISSLS FPALGQSDKI SNFASSRPLA SAIRICTKFS RLSLNSRSTS KSLIHCMSNV TADVPPVSET KSKFLKAYKR PIPSIYNTVL QELIVQQHLM
101: RYKKTYRYDP VFALGFVTVY DQLMEGYPSD QDRDAIFKAY IEALNEDPKQ YRIDAQKMEE WARSQTSASL VDFSSKEGDI EAVLKDIAGR AGSKEGFSYS
201: RFFAVGLFRL LELASATDPT VLDKLCASLN INKKSVDRDL DVYRNLLSKL VQAKELLKEY VEREKKKQGE RAQSQKANET ISKCLGDTLY NPSFLVERKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)