suba logo
AT2G20880.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G28140.1); Has 5938 Blast hits to 5739 proteins in 258 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 2; Plants - 5899; Viruses - 2; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioGrid:1975eggNOG:ENOG410IE06eggNOG:ENOG410YGYWEMBL:AC006234EMBL:AY062843EMBL:AY081659EMBL:CP002685
EnsemblPlants:AT2G20880EnsemblPlants:AT2G20880.1entrez:816622Gene3D:3.30.730.10GeneID:816622Genevisible:Q9SKT1GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0009651GO:GO:0009873GO:GO:2000070
Gramene:AT2G20880.1hmmpanther:PTHR31657hmmpanther:PTHR31657:SF9HOGENOM:HOG000112388InParanoid:Q9SKT1InterPro:IPR001471InterPro:IPR016177
iPTMnet:Q9SKT1KEGG:ath:AT2G20880OMA:QYWRDILPaxDb:Q9SKT1Pfam:PF00847Pfam:Q9SKT1Pfscan:PS51032
PhylomeDB:Q9SKT1PIR:E84594PRIDE:Q9SKT1PRINTS:PR00367PRO:PR:Q9SKT1PROSITE:PS51032ProteinModelPortal:Q9SKT1
Proteomes:UP000006548RefSeq:NP_179685.1SMART:SM00380SMR:Q9SKT1STRING:3702.AT2G20880.1SUPFAM:SSF54171TAIR:AT2G20880
UniGene:At.27216UniProt:Q9SKT1
Coordinates (TAIR10) chr2:+:8986053..8987063
Molecular Weight (calculated) 38399.70 Da
IEP (calculated) 6.41
GRAVY (calculated) -0.93
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MATAKNKGKS IRVLGTSEAE KKDEMELEEE FQFSSGKYKD SGPGSDMWLG DASSTSPRSL RKTRTFDRHN PYLVSSYATP QPPTTTTCSV SFPFYLPPAI
101: QNQQRFLHPN DPSGQRQQQM ISFDPQQQVQ PYVAQQQQQQ QHLLQYWRDI LKLSPSGRMM MMNMLRQESD LPLTRPPVQP FSATKLYRGV RQRHWGKWVA
201: EIRKPRNRTR LWLGTFDTAE EAAMAYDREA FKLRGETARL NFPELFLNKQ EPTPVHQKQC ETGTTSEDSS RRGEDDSSTA LAVGGVSEET GWAEAWFNAI
301: PEEWGPGSPL WDDYHFPISN HKDDLDATQN SSSDTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)