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AT2G20870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cell wall protein precursor, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cell wall protein precursor, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G28160.1); Has 75 Blast hits to 75 proteins in 18 species: Archae - 0; Bacteria - 27; Metazoa - 5; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J7BHeggNOG:ENOG410ZB3IEMBL:AC006234EMBL:BT030650
EMBL:CP002685EMBL:X74360EnsemblPlants:AT2G20870EnsemblPlants:AT2G20870.1
entrez:816620ExpressionAtlas:P47925GeneID:816620Genevisible:P47925
GO:GO:0005576GO:GO:0005618Gramene:AT2G20870.1hmmpanther:PTHR36733
HOGENOM:HOG000294230InParanoid:P47925KEGG:ath:AT2G20870OMA:FLVTIEP
PaxDb:P47925Pfam:P47925PhylomeDB:P47925PIR:D84594
PIR:S43789PRIDE:P47925PRO:PR:P47925Proteomes:UP000006548
RefSeq:NP_565490.1STRING:3702.AT2G20870.1TAIR:AT2G20870UniGene:At.26797
UniGene:At.7675UniProt:A6QRC7UniProt:P47925
Coordinates (TAIR10) chr2:-:8982239..8982661
Molecular Weight (calculated) 14260.40 Da
IEP (calculated) 9.12
GRAVY (calculated) 0.06
Length 140 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSLITSAV IVVVLSLVLG SVEQVSGLRH VPKSPKTTDV KHPDFLVTIE PKPTILIPGV GRFLLPPKCK KPFYPYNPVT GAPLTGGGIP SYNGGQGAGP
101: HTQLPGGDDT LVPNPGFEAP TPTIGAGTGS NGQVPPVPLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)