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AT2G20740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.906
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetraspanin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetraspanin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT2G20230.1); Has 160 Blast hits to 160 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:1956eggNOG:ENOG410IWH3eggNOG:ENOG410YHN9EMBL:AC006234EMBL:AF462842EMBL:AK175553EMBL:AK176086
EMBL:AY054217EMBL:AY097350EMBL:CP002685EnsemblPlants:AT2G20740EnsemblPlants:AT2G20740.1entrez:816603GeneID:816603
Genevisible:Q940P5GO:GO:0005774GO:GO:0016021hmmpanther:PTHR19282hmmpanther:PTHR19282:SF158HOGENOM:HOG000029054InParanoid:Q940P5
IntAct:Q940P5InterPro:IPR018499iPTMnet:Q940P5KEGG:ath:AT2G20740OMA:ICKWIGLPaxDb:Q940P5Pfam:PF00335
Pfam:Q940P5PhylomeDB:Q940P5PIR:G84592PRIDE:Q940P5PRO:PR:Q940P5Proteomes:UP000006548RefSeq:NP_179667.2
RefSeq:NP_973493.1RefSeq:NP_973494.1STRING:3702.AT2G20740.1TAIR:AT2G20740TMHMM:TMhelixUniGene:At.23632UniGene:At.71303
UniProt:Q940P5
Coordinates (TAIR10) chr2:+:8935788..8937292
Molecular Weight (calculated) 24657.50 Da
IEP (calculated) 7.07
GRAVY (calculated) 0.34
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRIVRSCLQ SMLKLVNSLI GMVGIAMILY AVWLIRQWQE QMGNLPFADS DHPVPWFIYS FLGLGAILCV VTCAGHIAAE TVNGCCLYLY MGFIVLLTMV
101: EGGVVADIFL NRDWKKDFPE DPSGAFHQFS KFIESNFKIC KWIGLSIVCV QGLSVLIAML LKALGPHPHR HYDSDDEYNV STVALLQDAR QPPPYVVGEP
201: MYGAKPGAWT VRLMKGQTGE R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)