AT2G20725.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : CAAX amino terminal protease family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CAAX amino terminal protease family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT1G14270.1); Has 2599 Blast hits to 2599 proteins in 824 species: Archae - 26; Bacteria - 2240; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:8934113..8935426 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33020.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.34 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.34 | ||||||||||||||||||||||||||||||||
| Length | 301 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MILGRWVSFS CGNTPVTNCS ERRRHTEFRR LSSASTCRPS LICSCLKSKS SQETTQIEQL GNGEGFSVLA SEIPWEDDNI WSTFALYMFS LHIPLSFGGL 101: SIVANILHRQ VLDPQTQVLS LVVLQMVELA GTVLLLRTTA KPQCKSINFL KGNNETREGR NWVVGSALGL GCLVGFIFVT SLVADQLFGP KAVHESELEK 201: IMVSGEVARS GCFALYCVVA PILEEIVYRR FLLTSLASRM EWWKALVISS GVFAAGHFSG EDFVQLFGIG CGLGLCYSWS GNLASSVLVH SLYNALTLLF 301: S |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)