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AT2G20710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G28020.1); Has 11752 Blast hits to 6161 proteins in 167 species: Archae - 2; Bacteria - 8; Metazoa - 34; Fungi - 49; Plants - 11475; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC006234EMBL:BT015322EMBL:BT029763EMBL:BX819495EMBL:CP002685
EnsemblPlants:AT2G20710EnsemblPlants:AT2G20710.1entrez:816599Gene3D:1.25.40.10GeneID:816599Genevisible:Q9SKU6GO:GO:0005739
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF644HOGENOM:HOG000091106InParanoid:Q9SKU6InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9SKU6
KEGG:ath:AT2G20710OMA:LNCYASKPaxDb:Q9SKU6Pfam:PF01535Pfam:PF13041Pfam:Q9SKU6Pfscan:PS51375
PhylomeDB:Q9SKU6PIR:D84592PRIDE:Q9SKU6PRO:PR:Q9SKU6PROSITE:PS51375ProteinModelPortal:Q9SKU6Proteomes:UP000006548
RefSeq:NP_179663.1RefSeq:NP_973492.1SMR:Q9SKU6STRING:3702.AT2G20710.1SUPFAM:SSF48452TAIR:AT2G20710TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.39655UniGene:At.63478UniProt:Q9SKU6
Coordinates (TAIR10) chr2:+:8926110..8927722
Molecular Weight (calculated) 56830.40 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.34
Length 490 amino acids
Sequence (TAIR10)
(BLAST)
001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)