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AT2G20570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GBF's pro-rich region-interacting factor 1
Curator
Summary (TAIR10)
Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.
Computational
Description (TAIR10)
GBF's pro-rich region-interacting factor 1 (GPRI1); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: GOLDEN2-like 2 (TAIR:AT5G44190.1); Has 2420 Blast hits to 2125 proteins in 147 species: Archae - 0; Bacteria - 17; Metazoa - 163; Fungi - 64; Plants - 2094; Viruses - 12; Other Eukaryotes - 70 (source: NCBI BLink).
Protein Annotations
BioGrid:1932eggNOG:ENOG410IH7KeggNOG:ENOG4111SK7EMBL:AB062489EMBL:AC007048EMBL:AC007109EMBL:AY026772
EMBL:AY028367EMBL:AY054600EMBL:AY081485EMBL:CP002685EnsemblPlants:AT2G20570EnsemblPlants:AT2G20570.1entrez:816579
ExpressionAtlas:Q9SIV3Gene3D:1.10.10.60GeneID:816579Genevisible:Q9SIV3GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:1900056hmmpanther:PTHR31312hmmpanther:PTHR31312:SF1HOGENOM:HOG000237698InParanoid:Q9SIV3IntAct:Q9SIV3
InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930PaxDb:Q9SIV3Pfam:PF00249Pfam:Q9SIV3
Pfscan:PS51294PhylomeDB:Q9SIV3PIR:H84590PRIDE:Q9SIV3PRO:PR:Q9SIV3PROSITE:PS51294ProteinModelPortal:Q9SIV3
Proteomes:UP000006548RefSeq:NP_565476.1SMR:Q9SIV3STRING:3702.AT2G20570.2SUPFAM:SSF46689TAIR:AT2G20570tair10-symbols:ATGLK1
tair10-symbols:GLK1tair10-symbols:GPRI1TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.24134UniProt:Q9SIV3
Coordinates (TAIR10) chr2:+:8855486..8857522
Molecular Weight (calculated) 45990.10 Da
IEP (calculated) 6.54
GRAVY (calculated) -0.52
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)