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AT2G20550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.961
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP40/DnaJ peptide-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP40/DnaJ peptide-binding protein; FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G20560.1); Has 11261 Blast hits to 11178 proteins in 2681 species: Archae - 101; Bacteria - 6256; Metazoa - 1091; Fungi - 651; Plants - 711; Viruses - 2; Other Eukaryotes - 2449 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0714EMBL:AC007109EMBL:AK228773EMBL:BT022071EMBL:BT023480EMBL:CP002685
EnsemblPlants:AT2G20550EnsemblPlants:AT2G20550.1EnsemblPlants:AT2G20550.2entrez:816577GeneID:816577GO:GO:0006457Gramene:AT2G20550.1
Gramene:AT2G20550.2hmmpanther:PTHR24078hmmpanther:PTHR24078:SF188InterPro:IPR002939InterPro:IPR008971KEGG:ath:AT2G20550KO:K09510
OMA:DISAEYFPfam:PF01556PhylomeDB:Q9SIL4PIR:F84590Proteomes:UP000006548Reactome:R-ATH-3371453Reactome:R-ATH-3371568
Reactome:R-ATH-3371571Reactome:R-ATH-5687128RefSeq:NP_001031380.1RefSeq:NP_179645.1SMR:Q9SIL4STRING:3702.AT2G20550.1SUPFAM:SSF49493
TAIR:AT2G20550UniGene:At.39676UniGene:At.50086UniProt:Q9SIL4
Coordinates (TAIR10) chr2:-:8846051..8847113
Molecular Weight (calculated) 30703.40 Da
IEP (calculated) 8.42
GRAVY (calculated) -0.51
Length 284 amino acids
Sequence (TAIR10)
(BLAST)
001: MSHPRNADDI FSEFFGVSRP SGPSGPRNAD DIYSEFFGVS SPSGPRNKDD IFSEFFEVSN PSGPRDKDDI SAEYFGVPSP SGSGSSGGRE GGGGGGGTMH
101: HGGARKAAPV EKKLPCSLED LYKGTTKKMK ISREIAGVFG KTTQVQEILT VDVKPGWKTG TKITFSEKGN EQPGVIPADL VFIIDEKPHP VFTREGNDLV
201: VTQKISVLEA FTGYTVNLTT LDGRRLTIPV NTVIHPEYVE VVPNEGMPLQ KDQAKKGNLR IKFNIKFPTT LTSEQKTGLK KLLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)