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AT2G20490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.863
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nucleolar RNA-binding Nop10p family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NOP10; FUNCTIONS IN: RNA binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: nucleolus, Cajal body; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nop10 (InterPro:IPR007264); Has 388 Blast hits to 388 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 120; Plants - 61; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2260eggNOG:KOG3503EMBL:AC007109EMBL:AY054656EMBL:AY087879EMBL:BT001178EMBL:CP002685
EnsemblPlants:AT2G20490EnsemblPlants:AT2G20490.1entrez:816569ExpressionAtlas:Q93XX8GeneID:816569Genevisible:Q93XX8GO:GO:0001522
GO:GO:0005730GO:GO:0006364GO:GO:0010197GO:GO:0015030GO:GO:0030515GO:GO:0072588hmmpanther:PTHR13305
hmmpanther:PTHR13305:SF0HOGENOM:HOG000159681InParanoid:Q93XX8IntAct:Q93XX8InterPro:IPR007264OMA:QRVTLKKPANTHER:PTHR13305
PaxDb:Q93XX8Pfam:PF04135Pfam:Q93XX8PhylomeDB:Q93XX8PIR:H84589PRIDE:Q93XX8PRO:PR:Q93XX8
ProteinModelPortal:Q93XX8Proteomes:UP000006548RefSeq:NP_565472.1SMR:Q93XX8STRING:3702.AT2G20490.1SUPFAM:SSF144210TAIR:AT2G20490
tair10-symbols:EDA27tair10-symbols:NOP10UniGene:At.14375UniProt:Q93XX8
Coordinates (TAIR10) chr2:+:8831897..8832723
Molecular Weight (calculated) 7391.92 Da
IEP (calculated) 9.95
GRAVY (calculated) -0.80
Length 64 amino acids
Sequence (TAIR10)
(BLAST)
1: MYLQCYINEK GEKVYTTKKE SPLGLATESA HPARFSPDDK YSKQRVLLKK RFGLLPTQNA PLQY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)