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AT2G20320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DENN (AEX-3) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DENN (AEX-3) domain-containing protein; CONTAINS InterPro DOMAIN/s: uDENN (InterPro:IPR005113), dDENN (InterPro:IPR005112), DENN (InterPro:IPR001194); BEST Arabidopsis thaliana protein match is: DENN (AEX-3) domain-containing protein (TAIR:AT5G35560.1); Has 1567 Blast hits to 1546 proteins in 147 species: Archae - 0; Bacteria - 2; Metazoa - 1072; Fungi - 78; Plants - 117; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II33eggNOG:ENOG410YREKEMBL:CP002685EnsemblPlants:AT2G20320EnsemblPlants:AT2G20320.1entrez:816551GeneID:816551
Gramene:AT2G20320.1hmmpanther:PTHR15288hmmpanther:PTHR15288:SF0InParanoid:F4IUH2InterPro:IPR001194InterPro:IPR005112InterPro:IPR005113
iPTMnet:F4IUH2KEGG:ath:AT2G20320OMA:AAFCFPGPaxDb:F4IUH2Pfam:PF02141Pfam:PF03456Pfscan:PS50211
Pfscan:PS50946Pfscan:PS50947PRIDE:F4IUH2PROSITE:PS50211PROSITE:PS50946PROSITE:PS50947ProteinModelPortal:F4IUH2
Proteomes:UP000006548RefSeq:NP_179622.5SMART:SM00799SMART:SM00801SMR:F4IUH2TAIR:AT2G20320UniGene:At.39711
UniProt:F4IUH2
Coordinates (TAIR10) chr2:+:8767082..8772271
Molecular Weight (calculated) 115641.00 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.44
Length 1029 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKPSFNTDMQ GDVLAVHRDD ILGYPKKTDV EDFRDGDENG WTTSSRRNTL DMVKEGMLLN AEELTTSCEE KVSISRDEFG TLRSEAQIMV ERDGVRSPVT
0101: SKCKTGDEQI TSWKNENGHE SFKLYEQGVL ERDEKVLDFV SRDNEESASG SPERDDITLS KEIKELDTQV VNGHLKVGGT EEDTAACDRC ENRDENRLLE
0201: KNSEDNELQS PRCETQVNNT SIRKMEMREV IGEQDSSPCT ADAVKVAGET YQNVYFNGPV LPQSPTQGHR RTQSEIGTPG HRRTNSFQRL KTQMQKAWRG
0301: VSNLREDNRP TFNPEVLANQ KRQWYQLHSS KALDQTKLKE PASLFEHFII VGLHPETNLR PVEEAFRRRK KWEMEMSRYE VADYRILRHR GPQFPILEPQ
0401: ILFKYPPGKK VAMRPKDLAT FCFPGGVKAR LLERTPSLSD LNELVYGQEH LGTDDSSFIF SFKVADDATL YGVCLHVSEI VQRPPGVLST ASPLHSSGGG
0501: SRFLVSAPRC YCLLTRVPFF ELHFEMLNSM IAQERLKRIT EFVSEMSLAA ACYLPSISRR NDQIDSRVSS PRSNPDDWMA SAIPVDGVMA LTAAAAGLIT
0601: DSDIANFAEP QSPDSVVTSD TSDVSQIKEI ERDGRKVFHC YDENSPEVFE NHLDTPERTS QSYDNGHTSP EVTCSDPRTQ PIERNESCES VFSSARSVLS
0701: DDVDELSNSE NDFGDDLILE WAKDHNNDSL QLVCGYHSLA IPSRGSEVVF HPLEHLQSIS YTRPPVSALG LSEEYICSSD SKEINARLAA AEEAMGLSMW
0801: TTATVCRILS LETIMSLLAG VLLEKQIVII CPNLGVLSAI VLSLVPMIRP FQWQSLLLPV LPGRMFDFLE APVPFLVGIH SKPIDWKVKT SNLILVNILN
0901: NQVKICNMPA LPQCRELMAQ LAPIHATLAH QSSNARRHPV YKCNEVQAEA ATKFLRVMRD YMESLCSDLH SHTITSVQSN SDRVSLLLKD SFIDSFPGRD
1001: RPFIKLFVDT QLFSVLSDSR LSSFENGSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)