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AT2G20230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.944
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15574830 (2004): plasma membrane
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetraspanin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetraspanin family protein; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT4G28770.2); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWQTeggNOG:ENOG410YNZEEMBL:AC006569EMBL:AY054570EMBL:AY064662EMBL:AY088475EMBL:CP002685
EnsemblPlants:AT2G20230EnsemblPlants:AT2G20230.1entrez:816542GeneID:816542Genevisible:Q93XY5GO:GO:0005773GO:GO:0005774
GO:GO:0016021Gramene:AT2G20230.1hmmpanther:PTHR19282hmmpanther:PTHR19282:SF227HOGENOM:HOG000029054InParanoid:Q93XY5InterPro:IPR000301
InterPro:IPR018499iPTMnet:Q93XY5KEGG:ath:AT2G20230OMA:VILCCITPaxDb:Q93XY5Pfam:PF00335Pfam:Q93XY5
PhylomeDB:Q93XY5PIR:F84586PRIDE:Q93XY5PRINTS:PR00259PRO:PR:Q93XY5ProteinModelPortal:Q93XY5Proteomes:UP000006548
RefSeq:NP_565468.1STRING:3702.AT2G20230.1SwissPalm:Q93XY5TAIR:AT2G20230TCDB:8.A.40.5.2TMHMM:TMhelixUniGene:At.13955
UniGene:At.48496UniProt:Q93XY5
Coordinates (TAIR10) chr2:+:8725762..8727388
Molecular Weight (calculated) 29723.00 Da
IEP (calculated) 4.93
GRAVY (calculated) 0.23
Length 270 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRNCCHVSF ASTLKILNFV QAFIGVSIII YSIWMLHEYS RHLPVDPPPS ASSSSGTEIA TSVSEPLKNP IDFVASIILG SNGGDHGFNL RSLDLPAPWF
101: IYSFMAVGIL VCIVTFIGFI AAEAINGCCL CFYSILKTLL ILLEAALVAY IAIDRHWEKD LPYDPTGELS SLRAFIEENI DICKWVGIAV VAVQLLSLLL
201: AMVLRAMVST PKPELDEEED DENPRSRTWD PLLGPQGNQA PAGSSKIENW SSRIREKYGL NQSPPVNPKG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)