suba logo
AT2G20208.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Predictors External Curations
SwissProt : extracellular 16381842
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : low-molecular-weight cysteine-rich 60
Curator
Summary (TAIR10)
Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.
Computational
Description (TAIR10)
low-molecular-weight cysteine-rich 60 (LCR60); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 61 (TAIR:AT4G30064.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:528285eggNOG:ENOG410JSBGeggNOG:ENOG41113RVEMBL:AC006569
EMBL:CP002685EnsemblPlants:AT2G20208EnsemblPlants:AT2G20208.1entrez:3767924
GeneID:3767924GO:GO:0005576GO:GO:0031640GO:GO:0050832
Gramene:AT2G20208.1HOGENOM:HOG000006494InParanoid:P82774KEGG:ath:AT2G20208
OMA:QNMGCTAPaxDb:P82774Pfam:P82774PhylomeDB:P82774
PRO:PR:P82774ProteinModelPortal:P82774Proteomes:UP000006548RefSeq:NP_001031377.1
TAIR:AT2G20208tair10-symbols:LCR60TMHMM:TMhelixUniGene:At.63198
UniProt:P82774
Coordinates (TAIR10) chr2:+:8720864..8721300
Molecular Weight (calculated) 8914.71 Da
IEP (calculated) 6.20
GRAVY (calculated) 0.16
Length 84 amino acids
Sequence (TAIR10)
(BLAST)
1: MAKASSTLVL SIIFLVMFAL VEQNMGCTAT MGPCEKDKSC SATCRATFGD RANGFCDYST STSPGGECTC VYHCPPVVPH ESHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)