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AT2G20142.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.702
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Toll-Interleukin-Resistance (TIR) domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Toll-Interleukin-Resistance (TIR) domain family protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G44480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW9YeggNOG:ENOG411054MEMBL:CP002685EnsemblPlants:AT2G20142EnsemblPlants:AT2G20142.1entrez:2745551Gene3D:3.40.50.10140
GeneID:2745551GO:GO:0007165GO:GO:0016021Gramene:AT2G20142.1hmmpanther:PTHR11017InParanoid:F4IUF0InterPro:IPR000157
KEGG:ath:AT2G20142OMA:NIAGEYSPaxDb:F4IUF0Pfam:PF01582Pfscan:PS50104PhylomeDB:F4IUF0PRIDE:F4IUF0
PROSITE:PS50104ProteinModelPortal:F4IUF0Proteomes:UP000006548RefSeq:NP_973487.2SMART:SM00255SMR:F4IUF0STRING:3702.AT2G20142.1
SUPFAM:SSF52200TAIR:AT2G20142TMHMM:TMhelixUniGene:At.28697UniProt:F4IUF0
Coordinates (TAIR10) chr2:+:8695387..8696566
Molecular Weight (calculated) 36198.10 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.04
Length 313 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSSPKMKHD VFISFRSKDT RDNFVSHLCG CLRRKRIKTF LYDELPADER YEESLKAIEV SKISVIVFSE NFGDSRWCLD EVVAILKCKE KFGQIVIPVL
101: YHVDPLDIEN QTGSFGDAFA KRRDKAEQLQ EWKDSFTEAI NLPGWSTAYL SDEEMLVNGI AREIENKLLR ASRTKVMIEW SLVITNLMLE IPSSVFDQIS
201: SAHKPLYALA AMSMSLLSCL LCIVDLLHKG RVDRVVWKWT WPIPWFHYQT QRSNRFGSFP EMLGLVCALC QTTITAVNYS FITRRDDTPI KFSVWPIMFA
301: LGLLCTLLIK RFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)