AT2G20142.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.955 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Toll-Interleukin-Resistance (TIR) domain family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Toll-Interleukin-Resistance (TIR) domain family protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G44480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:8695387..8696566 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36198.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.14 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||
| Length | 313 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSSPKMKHD VFISFRSKDT RDNFVSHLCG CLRRKRIKTF LYDELPADER YEESLKAIEV SKISVIVFSE NFGDSRWCLD EVVAILKCKE KFGQIVIPVL 101: YHVDPLDIEN QTGSFGDAFA KRRDKAEQLQ EWKDSFTEAI NLPGWSTAYL SDEEMLVNGI AREIENKLLR ASRTKVMIEW SLVITNLMLE IPSSVFDQIS 201: SAHKPLYALA AMSMSLLSCL LCIVDLLHKG RVDRVVWKWT WPIPWFHYQT QRSNRFGSFP EMLGLVCALC QTTITAVNYS FITRRDDTPI KFSVWPIMFA 301: LGLLCTLLIK RFR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)