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AT2G20110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tesmin/TSO1-like CXC domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tesmin/TSO1-like CXC domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT4G29000.1); Has 1013 Blast hits to 701 proteins in 101 species: Archae - 0; Bacteria - 4; Metazoa - 299; Fungi - 6; Plants - 316; Viruses - 1; Other Eukaryotes - 387 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110UR5eggNOG:KOG1171EMBL:AB493556EMBL:AC006081EMBL:AY163773EMBL:AY163774EMBL:AY163775
EMBL:CP002685EnsemblPlants:AT2G20110EnsemblPlants:AT2G20110.1entrez:816530GeneID:816530Genevisible:Q9SL70GO:GO:0005634
GO:GO:0007275GO:GO:0046872hmmpanther:PTHR12446hmmpanther:PTHR12446:SF14HOGENOM:HOG000082876InParanoid:Q9SL70IntAct:Q9SL70
InterPro:IPR005172InterPro:IPR028307InterPro:IPR033467iPTMnet:Q9SL70KEGG:ath:AT2G20110OMA:CLNRIISPANTHER:PTHR12446
PaxDb:Q9SL70Pfam:PF03638Pfam:Q9SL70Pfscan:PS51634PhylomeDB:Q9SL70PIR:B84585PRIDE:Q9SL70
PRO:PR:Q9SL70PROSITE:PS51634ProteinModelPortal:Q9SL70Proteomes:UP000006548RefSeq:NP_179601.1RefSeq:NP_849995.1SMART:SM01114
STRING:3702.AT2G20110.2TAIR:AT2G20110UniGene:At.39743UniProt:Q9SL70
Coordinates (TAIR10) chr2:+:8684496..8686870
Molecular Weight (calculated) 61316.10 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.64
Length 571 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEGEEGDKF PPKTDEVTQE SMKSARQLDF TGGSSDVEHS HSNQASSMAA ASIPSPIVTV TRPIITSQAP PTVATPIPPP PQSQGIILHV PIRHPRPESP
101: NSMPRPAGET RDGTPQKKKQ CNCKHSRCLK LYCECFASGT YCDGCNCVNC FNNVENEPAR RQAVESTLER NPNAFRPKIA ASPHGGRDNR EEVGDVVMLA
201: RHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCLDCKNFE GSEVRQSLFH GEHSHNLAYL QHANAAITGA IGSSGFASAP PPKRRKGQEI FFNQGTKDSS
301: THRLGQANNG RTTSSQTGSR AGGNASLGPS KVVYKSLLAN IIKPMDVKAL CSVLVAVAGE AAKTLTEKRL ANQKETSVAS SVQDQGHVNN KAEKSGLEDS
401: NADGSKGRSL SPETLALMCD ERDTMLMVAA SPNCSVEPTS QLPNGQDQVY AEQEKVVLTK FRDCLNRIIS CGEVKESNCS MSRMDLDTPV QTTVRIDPVV
501: QQAPVANGVS QTAKQPSQLN TTTPNTSSQT ANGVSQTAKQ PSQLTTTTTT PNTSSQTHLH KTPALSEKKD L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)