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AT2G20060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L4/L1 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L4/L1 family; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: ribosomal protein L4 (TAIR:AT1G07320.4); Has 8236 Blast hits to 8236 proteins in 2694 species: Archae - 70; Bacteria - 5573; Metazoa - 121; Fungi - 129; Plants - 100; Viruses - 0; Other Eukaryotes - 2243 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0088eggNOG:KOG1624EMBL:AC006081EMBL:AY072419EMBL:BT002156EMBL:CP002685EnsemblPlants:AT2G20060
EnsemblPlants:AT2G20060.1entrez:816525Gene3D:3.40.1370.10GeneID:816525GO:GO:0003735GO:GO:0005840GO:GO:0006412
Gramene:AT2G20060.1HAMAP:MF_01328_Bhmmpanther:PTHR10746IntAct:Q8VY61InterPro:IPR002136InterPro:IPR013005InterPro:IPR023574
KEGG:ath:AT2G20060KO:K02926OMA:AAWKSVQPANTHER:PTHR10746Pfam:PF00573PhylomeDB:Q8VY61PIR:E84584
Proteomes:UP000006548RefSeq:NP_565463.1SMR:Q8VY61STRING:3702.AT2G20060.1SUPFAM:SSF52166TAIR:AT2G20060TIGRfam:TIGR03953
TIGRFAMs:TIGR03953UniGene:At.39751UniProt:Q8VY61
Coordinates (TAIR10) chr2:+:8659384..8661227
Molecular Weight (calculated) 33265.50 Da
IEP (calculated) 10.97
GRAVY (calculated) -0.35
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)