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AT2G20020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding CRS1 / YhbY (CRM) domain-containing protein
Curator
Summary (TAIR10)
Promotes the splicing of chloroplast group II introns. Splices clpP-1 and ropC1 introns.
Computational
Description (TAIR10)
CAF1; FUNCTIONS IN: RNA binding; INVOLVED IN: Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT1G23400.1); Has 330 Blast hits to 282 proteins in 47 species: Archae - 0; Bacteria - 32; Metazoa - 20; Fungi - 4; Plants - 265; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEAAeggNOG:ENOG410XQZ0EMBL:AC006081EMBL:AY045882EMBL:BT004337EMBL:CP002685EnsemblPlants:AT2G20020
EnsemblPlants:AT2G20020.1entrez:816521Gene3D:3.30.110.60GeneID:816521Genevisible:Q9SL79GO:GO:0000373GO:GO:0003723
GO:GO:0006397GO:GO:0009570GO:GO:0030529Gramene:AT2G20020.1hmmpanther:PTHR31846hmmpanther:PTHR31846:SF8HOGENOM:HOG000242611
InParanoid:Q9SL79InterPro:IPR001890KEGG:ath:AT2G20020ncoils:CoilOMA:PVTPVYPPaxDb:Q9SL79Pfam:PF01985
Pfam:Q9SL79Pfscan:PS51295PhylomeDB:Q9SL79PIR:A84584PRIDE:Q9SL79PRO:PR:Q9SL79PROSITE:PS51295
ProteinModelPortal:Q9SL79Proteomes:UP000006548RefSeq:NP_565462.1SMART:SM01103SMR:Q9SL79STRING:3702.AT2G20020.1SUPFAM:SSF75471
TAIR:AT2G20020tair10-symbols:ATCAF1tair10-symbols:CAF1UniGene:At.13487UniProt:Q9SL79
Coordinates (TAIR10) chr2:+:8644464..8647090
Molecular Weight (calculated) 79059.20 Da
IEP (calculated) 8.75
GRAVY (calculated) -0.74
Length 701 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLKLNTPFP IFAPSLFPNH NPRAPSEIRF SRWGNANAER FEQRRRSQEE LEAEIRRDRR FDAATKIVHT HDSEAAAAEP KTSPFRSRGT PSLPSARSIP
101: GRRSKYSKPD SGPNRPKNKP RVPDSPPQLD AKPEVKLSED GLTYVINGAP FEFKYSYTET PKVKPLKLRE PAYAPFGPTT MGRPWTGRAP LPQSQKTPRE
201: FDSFRLPPVG KKGLKPVQKP GPFRPGVGPR YVYSKEEILG EPLTKEEVRE LVTSCLKTTR QLNMGRDGLT HNMLNNIHDL WKRRRVCKIK CKGVCTVDMD
301: NVCEQLEEKI GGKVIYRRGG VLFLFRGRNY NHRTRPRFPL MLWKPVAPVY PRLIQQVPEG LTRQEATNMR RKGRELMPIC KLGKNGVYCD LVKNVKEAFE
401: VCELVRIDCQ GMKGSDFRKI GAKLKDLVPC VLVSFENEQI LIWRGREWKS SLTTPDKKGD ILEDIEVDTA LPEDDEPSVS PNQSQTMTQN PPLDSMELQN
501: DPDGHDLSPS TVDSSEMEGT INSLQSWSTK DVTEPTVDSF LRDLEEPEDE PETSEEISKQ SIERVLILMK QAVESGTALV LDAADLDADT VFSKAVAFSS
601: VASPGPVFQH GLRKQPTVKK QESQEFGYGD LEAKSSNVVV SRNASKSSNV VVFGKREVAE RGEREEKEEG SKKKMDEFAE DYREVMPHGT LKVDELAKLL
701: A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)