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AT2G19940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, copper ion binding; INVOLVED IN: response to cadmium ion, cellular amino acid metabolic process; LOCATED IN: nucleolus, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Semialdehyde dehydrogenase, dimerisation domain (InterPro:IPR012280), Semialdehyde dehydrogenase, NAD-binding (InterPro:IPR000534), N-acetyl-gamma-glutamyl-phosphate reductase (InterPro:IPR000706); Has 8034 Blast hits to 8033 proteins in 2187 species: Archae - 385; Bacteria - 4804; Metazoa - 0; Fungi - 163; Plants - 77; Viruses - 0; Other Eukaryotes - 2605 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2201-MONOMERDNASU:816513eggNOG:COG0002eggNOG:KOG4354EMBL:AK318806EnsemblPlants:AT2G19940EnsemblPlants:AT2G19940.1
EnsemblPlants:AT2G19940.2entrez:816513entrez:817666ExpressionAtlas:C0Z2J2Gene3D:3.40.50.720GeneID:816513GeneID:817666
GO:GO:0003942GO:GO:0005507GO:GO:0005737GO:GO:0006526GO:GO:0051287Gramene:AT2G19940.1Gramene:AT2G19940.2
gramene_pathway:1.2.1.38gramene_pathway:2.7.2.8gramene_pathway:ARGSYNBSUB-PWYgramene_pathway:GLUTORN-PWYgramene_plant_reactome:1119273gramene_plant_reactome:1119295gramene_plant_reactome:1119539
gramene_plant_reactome:6873780gramene_plant_reactome:6875406gramene_plant_reactome:6876774HAMAP:MF_00150hmmpanther:PTHR32338hmmpanther:PTHR32338:SF8InterPro:IPR000534
InterPro:IPR000706InterPro:IPR012280InterPro:IPR016040InterPro:IPR023013KEGG:00220+1.2.1.38KEGG:ath:AT2G19940KEGG:ath:AT2G31100
KO:K00145OMA:TFVPHLTPaxDb:C0Z2J2Pfam:PF01118Pfam:PF02774Pfam:Q93Z70PhylomeDB:C0Z2J2
PRIDE:C0Z2J2PROSITE:PS01224ProteinModelPortal:C0Z2J2RefSeq:NP_180668.5RefSeq:NP_565461.4RefSeq:NP_849993.4scanprosite:PS01224
SMART:SM00859SMR:C0Z2J2STRING:3702.AT2G19940.1SUPFAM:SSF51735SUPFAM:SSF55347TAIR:AT2G19940TIGRfam:TIGR01850
TIGRFAMs:TIGR01850UniGene:At.21379UniGene:At.38263UniGene:At.74911unipathway:UPA00068UniProt:C0Z2J2UniProt:Q93Z70
Coordinates (TAIR10) chr2:+:8613168..8615649
Molecular Weight (calculated) 44138.40 Da
IEP (calculated) 8.46
GRAVY (calculated) -0.14
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTASAFSSI QGCWFKGERK IRVADKRAKR LTLGSHVASP SSMSFRVSAS SSVKPEKDIR IGLLGASGYT GAEIVRLLAN HPHFQVTLMT ADRKAGQSME
101: SVFPHLRAQK LPTLVSVKDA DFSTVDAVFC CLPHGTTQEI IKELPTALKI VDLSADFRLR NIAEYEEWYG QPHKAVELQK EVVYGLTEIL REDIKKARLV
201: ANPGCYPTTI QLPLVPLLKA NLIKHENIII DAKSGVSGAG RGAKEANLYS EIAEGISSYG VTRHRHVPEI EQGLSDVAQS KVTVSFTPHL MPMIRGMQST
301: IYVEMAPGVR TEDLHQQLKT SYEDEEFVKV LDEGVVPRTH NVRGSNYCHM SVFPDRIPGR AIIISVIDNL VKGASGQALQ NLNIMLGYPE TTGLLHQPLF
401: P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)