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AT2G19770.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : profilin 5
Curator
Summary (TAIR10)
Encodes profilin 5, originally named profilin 4 (PRO4/PFN4). Low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Pollen-specific plant profilin present predominantly in mature pollen and growing pollen tubes.
Computational
Description (TAIR10)
profilin 5 (PRF5); CONTAINS InterPro DOMAIN/s: Profilin/allergen (InterPro:IPR002097), Profilin, plant (InterPro:IPR005455); BEST Arabidopsis thaliana protein match is: profilin 4 (TAIR:AT4G29340.1); Has 915 Blast hits to 914 proteins in 244 species: Archae - 0; Bacteria - 2; Metazoa - 138; Fungi - 121; Plants - 583; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41126PDeggNOG:KOG1755EMBL:DQ446526EnsemblPlants:AT2G19770
EnsemblPlants:AT2G19770.1entrez:816496ExpressionAtlas:Q1PF40GeneID:816496
GO:GO:0005856Gramene:AT2G19770.1hmmpanther:PTHR11604hmmpanther:PTHR11604:SF8
InterPro:IPR005455InterPro:IPR027310KEGG:ath:AT2G19770KO:K05759
OMA:SAFPKFKPANTHER:PTHR11604PaxDb:Q1PF40Pfam:PF00235
Pfam:Q38905PhylomeDB:Q1PF40PRIDE:Q1PF40PRINTS:PR00392
PRINTS:PR01640PRO:PR:Q38905PROSITE:PS00414ProteinModelPortal:Q1PF40
RefSeq:NP_179567.1scanprosite:PS00414SMART:SM00392SMR:Q1PF40
STRING:3702.AT2G19770.1SUPFAM:SSF55770TAIR:AT2G19770tair10-symbols:PRF5
UniGene:At.39795UniProt:Q1PF40UniProt:Q38905
Coordinates (TAIR10) chr2:-:8519885..8521119
Molecular Weight (calculated) 14550.50 Da
IEP (calculated) 4.84
GRAVY (calculated) -0.15
Length 134 amino acids
Sequence (TAIR10)
(BLAST)
001: MSWQAYVDEH LMCDVGDGQG HHLTAAAIIG HDGSVWAQSA NFPQFKPQEI TDIMKDFDEP GHLAPTGMFL AGLKYMVIQG EPNAVIRGKK GAGGITIKKT
101: GQSMVFGLYE EPVTPGQCNM VVERLGDYLI EQGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)