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AT2G19750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S30 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S30 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S30 (InterPro:IPR006846); BEST Arabidopsis thaliana protein match is: Ribosomal protein S30 family protein (TAIR:AT5G56670.1); Has 682 Blast hits to 682 proteins in 246 species: Archae - 2; Bacteria - 0; Metazoa - 304; Fungi - 135; Plants - 106; Viruses - 1; Other Eukaryotes - 134 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41123KCeggNOG:KOG0009EMBL:AK226272EnsemblPlants:AT2G19750EnsemblPlants:AT2G19750.1EnsemblPlants:AT4G29390.1EnsemblPlants:AT5G56670.1
entrez:816494entrez:829060entrez:835768ExpressionAtlas:Q0WWR7GeneID:816494GeneID:829060GeneID:835768
GO:GO:0003735GO:GO:0005840GO:GO:0006412Gramene:AT2G19750.1Gramene:AT4G29390.1Gramene:AT5G56670.1hmmpanther:PTHR12650
InterPro:IPR006846KEGG:ath:AT2G19750KEGG:ath:AT4G29390KEGG:ath:AT5G56670KO:K02983OMA:MSKVHGSPaxDb:Q0WWR7
Pfam:P49689Pfam:PF04758PhylomeDB:Q0WWR7PRIDE:Q0WWR7ProteinModelPortal:Q0WWR7RefSeq:NP_194668.1RefSeq:NP_200478.1
RefSeq:NP_565458.1SMR:Q0WWR7STRING:3702.AT5G56670.1TAIR:AT2G19750TAIR:AT4G29390TAIR:AT5G56670UniGene:At.22292
UniGene:At.27598UniGene:At.46738UniGene:At.66661UniProt:P49689UniProt:Q0WWR7
Coordinates (TAIR10) chr2:+:8515037..8515806
Molecular Weight (calculated) 6887.52 Da
IEP (calculated) 12.75
GRAVY (calculated) -1.28
Length 62 amino acids
Sequence (TAIR10)
(BLAST)
1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)