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AT2G19730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal L28e protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal L28e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672); BEST Arabidopsis thaliana protein match is: Ribosomal L28e protein family (TAIR:AT4G29410.2); Has 531 Blast hits to 531 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 280; Fungi - 94; Plants - 107; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Protein Annotations
BioGrid:1847eggNOG:ENOG4111T32eggNOG:KOG3412EMBL:AC005169EMBL:AY050769EMBL:AY079378EMBL:CP002685
EnsemblPlants:AT2G19730EnsemblPlants:AT2G19730.1EnsemblPlants:AT2G19730.2EnsemblPlants:AT2G19730.3entrez:816492GeneID:816492Genevisible:O82204
GO:GO:0003735GO:GO:0005618GO:GO:0005886GO:GO:0006412GO:GO:0009506GO:GO:0009507GO:GO:0009735
GO:GO:0022625GO:GO:0022626Gramene:AT2G19730.1Gramene:AT2G19730.2Gramene:AT2G19730.3hmmpanther:PTHR10544HOGENOM:HOG000200513
InParanoid:O82204IntAct:O82204InterPro:IPR002672InterPro:IPR029004iPTMnet:O82204KEGG:ath:AT2G19730KO:K02903
OMA:MATVPDSPANTHER:PTHR10544PaxDb:O82204Pfam:O82204Pfam:PF01778PhylomeDB:O82204PIR:D84580
PRIDE:O82204PRO:PR:O82204ProteinModelPortal:O82204Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689
Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_001031374.1RefSeq:NP_001077920.1RefSeq:NP_179563.1SMR:O82204
STRING:3702.AT2G19730.1TAIR:AT2G19730UniGene:At.12891UniProt:O82204
Coordinates (TAIR10) chr2:+:8511752..8512995
Molecular Weight (calculated) 15896.40 Da
IEP (calculated) 11.30
GRAVY (calculated) -0.62
Length 143 amino acids
Sequence (TAIR10)
(BLAST)
001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)