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AT2G19720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ribosomal protein S15A B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ribosomal protein S15A B (rps15ab); CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: ribosomal protein S15A E (TAIR:AT4G29430.1); Has 3453 Blast hits to 3453 proteins in 1209 species: Archae - 277; Bacteria - 1569; Metazoa - 426; Fungi - 219; Plants - 302; Viruses - 0; Other Eukaryotes - 660 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0096eggNOG:KOG1754EMBL:AC005169EMBL:BT014766
EMBL:BT014999EMBL:CP002685EnsemblPlants:AT2G19720EnsemblPlants:AT2G19720.1
entrez:816491GeneID:816491Genevisible:O82205GO:GO:0003735
GO:GO:0006412GO:GO:0022627Gramene:AT2G19720.1hmmpanther:PTHR11758
hmmpanther:PTHR11758:SF11HOGENOM:HOG000204097InParanoid:O82205InterPro:IPR000630
KEGG:ath:AT2G19720KO:K02957OMA:QYTERTLPANTHER:PTHR11758
PaxDb:O82205Pfam:O82205Pfam:PF00410PhylomeDB:O82205
PIR:C84580PRIDE:O82205PRO:PR:O82205PROSITE:PS00053
ProteinModelPortal:O82205Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_179562.1scanprosite:PS00053
SMR:O82205STRING:3702.AT2G19720.1SUPFAM:SSF56047TAIR:AT2G19720
tair10-symbols:rps15abUniGene:At.48493UniGene:At.71155UniProt:O82205
Coordinates (TAIR10) chr2:-:8510223..8511258
Molecular Weight (calculated) 14694.80 Da
IEP (calculated) 10.32
GRAVY (calculated) -0.46
Length 129 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRRILNDAL RTIVNAEKRG KASVELKPVS TVMSSFLKIM KEKGYIKNFQ VHDPHRVGRI TVDLQGRVND CKALTYRQDV KANEIGQYTE RTLPTRQWGY
101: IVITTPDGIL DHEEAIKRNV GGQVLGFFH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)