AT2G19650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G37620.1); Has 1789 Blast hits to 656 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 1744; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8493655..8495703 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79122.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.03 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||
| Length | 682 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENFLALFNE GMDEEASRLE KLLPFHEHPL IPFTRFEFTK CKGCYSTDED NTSFISKHPG CSYIYGGHRC NEPGCDVVFH EECAKPLPEI DHPYHPVHPL 101: KLILLHTRVS NCSFCGEFFS VGYRCNKCDF QLDLICARRP ALLVLAENSY LHEHPLQLSH EAHETLRDCK GCGHQHNSWK HFYTCHQCEF FISLDCIDHN 201: SPEAYHTSHP QHPLKSLRYE VPGYADKKCL LCREEFDGIH RQLHHCGVCN FSICRSCMKN PPPVLVKSPR THEHQLHLVP RRIDFTCNAC GTLGDRSPYF 301: CLQCNFMIHR ECIDLPRVIN INRHDHRISY TPRLGHGDGK CRVCRKNVDG FYGAYSCSKC FDYFVHSRCA TRRDVWDMIE LEGTPEEEET APFKVIDDNT 401: IDHYGHKHNL RIYRGWNLPE SVVCTACVFQ ICSEPFYACA RKRCDFIIHE KCAKLPLKKR HVCHNQPLEL SPNYGTYLLH RCSICRQLFT GFSYESKELR 501: IDVRCATVTE PFEHKSHQHP LHYSTDHSKR CSECDGDGKL SCDDCEFGLC FKCAILPQKV MRHRYDDHPL FLSYGEMGVA GKYWCEACET TVNPEKWFYT 601: CNECGITLHI SCVIDTYAYS MPGALTWIGT FVSNHSICRP LCCVCNSRCK LPFVRTLPED GADLYFCSLE CEKKIYQERF EF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)