AT2G19620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : N-MYC downregulated-like 3 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
N-MYC downregulated-like 3 (NDL3); CONTAINS InterPro DOMAIN/s: Pollen specific protein SF21 (InterPro:IPR015511), Ndr (InterPro:IPR004142); BEST Arabidopsis thaliana protein match is: N-MYC downregulated-like 1 (TAIR:AT5G56750.1); Has 904 Blast hits to 903 proteins in 145 species: Archae - 0; Bacteria - 134; Metazoa - 564; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8486131..8488651 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38704.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.69 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||
| Length | 347 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGLNNAVSL DIEEICNGGK EHHVKTCHGS VSVVVYGDQE KPALITYPDV ALNYMSCFQG LFLCPEAVSL LLHNFCIYHI SPPGHEFGAA PVCSNDPSPS 101: VEDLADQILE VLNFFSLEAV MCMGITAGAY ILSLFAIKHK ERVLGLILIS PLCKAPSWSE WFYYKVVSNL LYYYGMSGLL KDIFLQRYFS KEARGSSEVP 201: ERDVVHECRR LLGERHGSSL MRFLEAVNRR HDLTDGLKSL KCRTLIFVGD QSPFHSETLH MVTALDRKYS ALVEVQACGS MVTEEQPHAM LIPMEFFFMG 301: FGLYRPGRVS DSPRSPLSPS CISPELLSPE SLGLKLKPIK TRVPTKC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)