AT2G19390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29790.1); Has 203 Blast hits to 188 proteins in 60 species: Archae - 0; Bacteria - 11; Metazoa - 24; Fungi - 34; Plants - 93; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8390136..8396477 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 133369.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.66 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||||||
| Length | 1211 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSAPGKFDYS SGGLDRPLYR SNFAAQMERS SSFRESMEHP VPSHPIMLRT TSPIAQTDVT NFFQCLRFDP KVVAADHKSI RQGDFKRHVS IALGILGDES 0101: PSGSLKGKFI PSPIPEEIKR FKAGLRENNV KARERVKIFN EASSVFNKFF PSVPTKKRSR PEGFSGDRSG DRLVSGPGLG KMGIQGQTLA GGFELDQQKL 0201: DERPKSGVPN KRTRTSMMDV RNNCIVRQSA AVDKDKEIMR VGNHNAVQGE DRTSTGIDGW ETSKMKKKRS SINADCHPNL ASNKVVDGYR DLKQGIQQKP 0301: TGDSRSRVNG DSNMFRQSAG NGATGYGRSD SLSHQTSLAG HSPLARVDSD HNSLYSEKRE RSIVSDKERV NLRGVNKSNI HDEFNSSSLV SNTKTNASVR 0401: GPRSGSGLPP KLSPGLHNTP SPIEWDISGC TNKPPTLSGV TQRKRMTSNR SSSPPVTQWA SQRPQKISRI ARRTNLVPIV SSQDEVPYSD NISDVGCSET 0501: GFGFHKRSPA ASPQLKLKGE SSFSTAALSE SEESGHPEIK SKDKGKQSDE VDGKAAQNIP RVSIPALQSR KSNKPAAGEE IGDGVRRQGR TGRGFSSTRS 0601: LNPNGVNKLK NVGTAKHLRS ARPIFDKNES KVGRPPTRKL SDRKAYKRQR ATATNAPTLD FHVGSNDGRE ELLAAVNSAI NIAQNFPNSF WKQMERYFGY 0701: ISDDHINFLK QQGELSSMGP TPVLTSSEFD SPVFPEELAT SRADSKASPL YQRLLSALIS EDSMGVNEDL QVDLDDDSEF SVLNNMEFNG FRNNERLELD 0801: ESENDGSAIL FKGVDKSAHH CNGKFPDNSP IDFVDIQYDK LGIDEKIYLE AQSLGISIDL MPSISNVEDE GIADEIKKLE EAICNEGSKK KEIVDRLLKP 0901: AIEMKELQEK ELDQLGYEKL IEMAYEKSKA SRRHHNAGGK NSNNKISKQA ALAFVRRTLE RCHQFEKTGK SCFSEPEIKD MFIAGLATAE DTLMDKEYNT 1001: STSTPMGSQP SSSLALIGQN SENYAKSSDV LPSENALLEQ TTGKEDTAWS NRVKKRELLL DDVGIGTQLS SNTKGKRSDR DRDGKGQASS RGGTNKIGRP 1101: SLSNAKGERK TKAKPKQKTT QISPSVRVPE QPKPSLPKPN EANSEYNNLE ALEETEPILD LSQLQIPDGL GDFDAQPGDI NSWFNMDDEE DFDMTELGIP 1201: TDDISELNIK L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)