AT2G19385.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc ion binding | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2, LYAR-type (InterPro:IPR014898); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G19380.1); Has 578 Blast hits to 525 proteins in 182 species: Archae - 0; Bacteria - 8; Metazoa - 240; Fungi - 111; Plants - 79; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:8387149..8388581 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30658.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.52 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.99 | ||||||||||||||||||||||||||||||||
| Length | 275 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVWFQCEDCG ESLKKPKVPS HFKMCRANKL SCIDCGEMFG RDTVQGHNQC ITEAEKYGPK GQSKSANGTP AKPKDISKQE PDFDINVGLS NRYPWFCSLC 101: NTKATSQQTL LAHADGKKHR GKAKAFHARQ QQEQSTTLDN KDGSENASNV DSEQKKVDLP ASSGVANGES HPEKKRKLET LDETSEGEEA KGSDLKKAKK 201: QDHEKKINWK KLITSALKSN EDKTLKMKKL KKLVLESIVD SGRDKSELKA ELELKVNLSS RFTVDGKYVK LVAKD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)