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AT2G19385.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26980300 (2016): nucleus nucleolus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc ion binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2, LYAR-type (InterPro:IPR014898); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT2G19380.1); Has 578 Blast hits to 525 proteins in 182 species: Archae - 0; Bacteria - 8; Metazoa - 240; Fungi - 111; Plants - 79; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG411081UeggNOG:KOG2186EMBL:AC003058EMBL:BT024496EMBL:CP002685EnsemblPlants:AT2G19385EnsemblPlants:AT2G19385.1
entrez:816457GeneID:816457Gramene:AT2G19385.1hmmpanther:PTHR13100hmmpanther:PTHR13100:SF10InterPro:IPR003604InterPro:IPR014898
KEGG:ath:AT2G19385KO:K15263OMA:AEGKKHRPfam:PF08790Pfam:PF12874PhylomeDB:Q8S8S8Proteomes:UP000006548
RefSeq:NP_565451.1SMART:SM00451SMR:Q8S8S8STRING:3702.AT2G19385.1SUPFAM:SSF57667TAIR:AT2G19385UniGene:At.39849
UniProt:Q8S8S8
Coordinates (TAIR10) chr2:+:8387149..8388581
Molecular Weight (calculated) 30658.30 Da
IEP (calculated) 9.52
GRAVY (calculated) -0.99
Length 275 amino acids
Sequence (TAIR10)
(BLAST)
001: MVWFQCEDCG ESLKKPKVPS HFKMCRANKL SCIDCGEMFG RDTVQGHNQC ITEAEKYGPK GQSKSANGTP AKPKDISKQE PDFDINVGLS NRYPWFCSLC
101: NTKATSQQTL LAHADGKKHR GKAKAFHARQ QQEQSTTLDN KDGSENASNV DSEQKKVDLP ASSGVANGES HPEKKRKLET LDETSEGEEA KGSDLKKAKK
201: QDHEKKINWK KLITSALKSN EDKTLKMKKL KKLVLESIVD SGRDKSELKA ELELKVNLSS RFTVDGKYVK LVAKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)