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AT2G19380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.987
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA recognition motif (RRM)-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2, LYAR-type (InterPro:IPR014898), RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, U1-type (InterPro:IPR003604), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G22100.1); Has 16733 Blast hits to 13987 proteins in 784 species: Archae - 1; Bacteria - 1070; Metazoa - 8707; Fungi - 1999; Plants - 3252; Viruses - 2; Other Eukaryotes - 1702 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG411081UeggNOG:KOG2186EMBL:AC003058EMBL:CP002685EnsemblPlants:AT2G19380EnsemblPlants:AT2G19380.1entrez:816456
Gene3D:3.30.70.330GeneID:816456Genevisible:O64571GO:GO:0000166GO:GO:0003723GO:GO:0005634GO:GO:0008270
Gramene:AT2G19380.1hmmpanther:PTHR24012hmmpanther:PTHR24012:SF391HOGENOM:HOG000114996InParanoid:O64571InterPro:IPR000504InterPro:IPR003604
InterPro:IPR012677InterPro:IPR014898InterPro:IPR015880KEGG:ath:AT2G19380OMA:ESADRDIPaxDb:O64571Pfam:O64571
Pfam:PF00076Pfam:PF08790Pfam:PF12874Pfscan:PS50102PhylomeDB:O64571PIR:T01286PRIDE:O64571
PRO:PR:O64571PROSITE:PS00028PROSITE:PS50102ProteinModelPortal:O64571Proteomes:UP000006548RefSeq:NP_565450.1SMART:SM00355
SMART:SM00360SMART:SM00451SMR:O64571STRING:3702.AT2G19380.1SUPFAM:SSF54928SUPFAM:SSF57667TAIR:AT2G19380
UniGene:At.50083UniProt:O64571
Coordinates (TAIR10) chr2:+:8383856..8386604
Molecular Weight (calculated) 69601.00 Da
IEP (calculated) 7.38
GRAVY (calculated) -0.86
Length 613 amino acids
Sequence (TAIR10)
(BLAST)
001: MVWFQCDDCG ENLKKPRLPR HMSMCTATKF SCIDCGNMFG QVSVHYHNQC ITEAEKYGPM VRSNGESSKQ KHDFDINAEL FNSQWFCSLC NATMTCEQDY
101: FAHVYGKKHQ EKANEVADMD YSKQQSEHPA VDKNNLTQQP DLDIYVGLSN DYPWFCSLCD INATSEQTLL AHANGKKHRV KVERFDAEQQ KRQSTQHSTV
201: DKKDYSKQQI EVDINVGLSN CYPWFCSLCN VKATCQQNLL SHANGRKHRE NVELFDATQQ QQLEKTTVDK KDTTVNASDG NSEQKKVDLL VSSGVANGYS
301: QAHKKRKLET CDETWKREVV QAEEAKGGGE QKSESKKAKK QDKEKKRKKD KKQTKSDSDF EHDKEDIKQL LVAYSKEELV NLIYKTAEKG SRLISAILES
401: ADRDIAQRNI FVRGFGWDTT QENLKTAFES YGEIEECSVV MDKDTGRGKG YGFVMFKTRK GAREALKRPE KRMYNRIVVC NLASEKPGKA GKEQDMAEPV
501: NIDLTKMANQ SEAVLPGIEL GRGHVLEKMH HQQQQTMDMF GQNMPFYGYS HQFPGFDPMY GALSGNQMLA GLPNYGMFGS GMMTNQGSML PPPNHLGMAG
601: QYFGDGEQAW HQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)