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AT2G19350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.766
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic protein of unknown function (DUF872)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic protein of unknown function (DUF872); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0414, transmembrane (InterPro:IPR008590); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF872) (TAIR:AT4G29850.1); Has 270 Blast hits to 270 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 166; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111TWAeggNOG:KOG4753EMBL:AC003058EMBL:AY087699EMBL:BT003966EMBL:BT005072EMBL:CP002685
EnsemblPlants:AT2G19350EnsemblPlants:AT2G19350.1entrez:816452GeneID:816452GO:GO:0016021Gramene:AT2G19350.1hmmpanther:PTHR15664
HOGENOM:HOG000231663InterPro:IPR008590KEGG:ath:AT2G19350OMA:DEDIMIGPfam:PF05915PhylomeDB:O64568PIR:T01283
Proteomes:UP000006548RefSeq:NP_565449.1STRING:3702.AT2G19350.1TAIR:AT2G19350TMHMM:TMhelixUniGene:At.39853UniProt:O64568
Coordinates (TAIR10) chr2:+:8376329..8377097
Molecular Weight (calculated) 11386.90 Da
IEP (calculated) 8.40
GRAVY (calculated) 0.58
Length 103 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYVDHAFSI SDEDLMIGTS YTVSNRPPVK EISLAVGLLV FGTLGIVLGF FMAYNRVGGD RGHGIFFIVL GCLLFIPGFY YTRIAYYAYK GYKGFSFSNI
101: PSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)