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AT2G19050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT2G19060.1); Has 3204 Blast hits to 3171 proteins in 126 species: Archae - 0; Bacteria - 159; Metazoa - 0; Fungi - 8; Plants - 3033; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G19050-MONOMEREC:3.1.1.-eggNOG:ENOG410JX3IeggNOG:ENOG41104BX
EMBL:AC002392EMBL:CP002685EnsemblPlants:AT2G19050EnsemblPlants:AT2G19050.1
entrez:816422Gene3D:3.40.50.1110GeneID:816422Genevisible:O64468
GO:GO:0005576GO:GO:0016042GO:GO:0016788Gramene:AT2G19050.1
hmmpanther:PTHR22835hmmpanther:PTHR22835:SF177HOGENOM:HOG000237649InParanoid:O64468
InterPro:IPR001087InterPro:IPR013830KEGG:ath:AT2G19050OMA:REETSQH
PaxDb:O64468Pfam:O64468Pfam:PF00657PhylomeDB:O64468
PIR:T00525PRIDE:O64468PRO:PR:O64468ProteinModelPortal:O64468
Proteomes:UP000006548RefSeq:NP_179495.1STRING:3702.AT2G19050.1SUPFAM:SSF52266
TAIR:AT2G19050UniGene:At.50082UniProt:O64468
Coordinates (TAIR10) chr2:+:8253416..8255534
Molecular Weight (calculated) 38579.20 Da
IEP (calculated) 8.66
GRAVY (calculated) -0.09
Length 349 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEAIFKALL LVIATTAFAT TEAALGQRVP CYFVFGDSVF DNGNNNVLNT SAKVNYSPYG IDFARGPTGR FSNGRNIPDI IAELMRFSDY IPPFTGASPE
101: QAHIGINYAS GGGGIREETS QHLGEIISFK KQIKNHRSMI MTAKVPEEKL NKCLYTINIG SNDYLNNYFM PAPYMTNKKF SFDEYADSLI RSYRSYLKSL
201: YVLGARKVAV FGVSKLGCTP RMIASHGGGN GCAAEVNKAV EPFNKNLKAL VYEFNRDFAD AKFTFVDIFS GQSPFAFFML GFRVTDKSCC TVKPGEELCA
301: TNEPVCPVQR RYVYWDNVHS TEAANMVVAK AAYAGLITSP YSLSWLARL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)