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AT2G18990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.420
cytosol 0.296
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : thioredoxin domain-containing protein 9 homolog
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
thioredoxin domain-containing protein 9 homolog (TXND9); INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin domain (InterPro:IPR013766); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G25580.1); Has 1035 Blast hits to 1035 proteins in 264 species: Archae - 10; Bacteria - 75; Metazoa - 396; Fungi - 154; Plants - 221; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0526eggNOG:KOG1672EMBL:AK119157EnsemblPlants:AT2G18990EnsemblPlants:AT2G18990.1entrez:816416ExpressionAtlas:Q541V3
Gene3D:3.40.30.10GeneID:816416GO:GO:0005623GO:GO:0045454Gramene:AT2G18990.1hmmpanther:PTHR21148InterPro:IPR012336
InterPro:IPR013766KEGG:ath:AT2G18990ncoils:CoilOMA:TKFIKLNPaxDb:Q541V3Pfam:O64628Pfam:PF00085
PhylomeDB:Q541V3PRIDE:Q541V3ProteinModelPortal:Q541V3RefSeq:NP_179489.1SMR:O64628SMR:Q541V3STRING:3702.AT2G18990.1
SUPFAM:SSF52833TAIR:AT2G18990tair10-symbols:TXND9UniGene:At.39911UniProt:O64628UniProt:Q541V3
Coordinates (TAIR10) chr2:-:8238851..8239932
Molecular Weight (calculated) 24452.30 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.64
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)