suba logo
AT2G18910.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.730
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; Has 87 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 2; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1VMeggNOG:ENOG410YXC5EMBL:AC003673EMBL:AY059891EMBL:AY087274EMBL:AY093348EMBL:CP002685
EnsemblPlants:AT2G18910EnsemblPlants:AT2G18910.1entrez:816407GeneID:816407Gramene:AT2G18910.1hmmpanther:PTHR37376hmmpanther:PTHR37376:SF1
HOGENOM:HOG000005807KEGG:ath:AT2G18910OMA:YYESKESPhylomeDB:O64621PIR:T01619Proteomes:UP000006548RefSeq:NP_565443.1
TAIR:AT2G18910UniGene:At.26603UniProt:O64621
Coordinates (TAIR10) chr2:-:8193016..8194131
Molecular Weight (calculated) 14340.10 Da
IEP (calculated) 9.39
GRAVY (calculated) -0.55
Length 131 amino acids
Sequence (TAIR10)
(BLAST)
001: MPINKDPSTP PPVIGKIGPY TVFMTPPATP KPPESPSAVS QKPVMAPPVL PPPQQFKSVA SSDQDGSVLG FFKNAVTKVQ NAHSSVDDHL VRWFGLNQSK
101: YQWALDEYYE SKESDMKTVK AKEMPGKVQS V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)