suba logo
AT2G18880.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vernalization5/VIN3-like
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
vernalization5/VIN3-like (VEL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: vernalization5/VIN3-like (TAIR:AT4G30200.3); Has 278 Blast hits to 186 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 278; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:1761EMBL:AC003673EMBL:AY262053EMBL:AY924744EMBL:CP002685EMBL:EF064793EnsemblPlants:AT2G18880
EnsemblPlants:AT2G18880.1entrez:816404Gene3D:2.60.40.10GeneID:816404Genevisible:Q5BPT4GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009409GO:GO:0046872GO:GO:0070417Gramene:AT2G18880.1hmmpanther:PTHR21736hmmpanther:PTHR21736:SF13
HOGENOM:HOG000238791InParanoid:Q5BPT4InterPro:IPR003961InterPro:IPR013783InterPro:IPR032881KEGG:ath:AT2G18880OMA:CNEIREL
PaxDb:Q5BPT4Pfam:PF00041Pfam:PF07227Pfam:Q5BPT4Pfscan:PS50853PhylomeDB:Q5BPT4PIR:T01616
PRIDE:Q5BPT4PRO:PR:Q5BPT4PROSITE:PS50853ProteinModelPortal:Q5BPT4Proteomes:UP000006548RefSeq:NP_179478.4STRING:3702.AT2G18880.1
SUPFAM:SSF49265TAIR:AT2G18880tair10-symbols:VEL2UniGene:At.39929UniProt:Q5BPT4
Coordinates (TAIR10) chr2:+:8176386..8178788
Molecular Weight (calculated) 59836.80 Da
IEP (calculated) 7.78
GRAVY (calculated) -0.42
Length 529 amino acids
Sequence (TAIR10)
(BLAST)
001: MASFHKGAAG DSMGSSKMSF DQRRQLVLKL SKESEREFKE VLKDWSCNEI RELLRAESKK DIKYTGLTKD EIITRLFNIV SKKNTRDHEV EEIIPSPKRQ
101: KRDLVTPLAK AKGKGKMYCQ NLACQNKLRE EATFCKRCSC CICFKYDDNK DPSLWLTCNS DSQFDGESCG LSCHLNCAFD SEKSGLKEDT PSSDIDGCFN
201: CVSCGKTNSK IECLKKQLII ANEERRVGVF CYRILLAHKL LKGTKKYIIV SEEVEKAVMH LKNEFGVPIS CLPSKMSRGL VNRLCCAEKV KKHCSSALKE
301: LDGLPLPSTI QGSMKIRIES VLATSVTFDI EAEESFSWGD TNHYRMVYRK VSEKHSSKDL TRELFSTSSH QRFTVMELTP ATEYWFKIVS FSGVEELSVD
401: EFIVSTKTLQ DEEVAAVLLN MSNCNNANKM EKSGSCSFGF EECVNLIRQL ECSGQVKSDF RKKFLTWYCL KATDKEKHVV EIFVDTFKDD KEALAKQLID
501: TFSDCITRKH PEIGGGSESA GVSLILLQD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)