AT2G18720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Translation elongation factor EF1A/initiation factor IF2gamma family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: serine-type peptidase activity, translation factor activity, nucleic acid binding, GTP binding, GTPase activity; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Initiation factor eIF2 gamma, C-terminal (InterPro:IPR015256), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Peptidase S26A, signal peptidase I, serine active site (InterPro:IPR019756), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1A/initiation factor IF2gamma family protein (TAIR:AT4G18330.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8114920..8116759 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51333.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.99 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 470 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSVVMSKNK GLAEQDLSKL DVAQLHPLSP EVISRQATIN IGTIGHVAHG KSTIVKAVSG VHTVKFKSEL ERNITIKLGY ANAKIYKCEK CPRPVAYKSF 101: GSGKEDNPSC DVSGHEKYKM KLLRHVSFVD CPGHDILMAT MLNGAAIMDG ALLIIAANET CPQPQTAEHL ASVDMMHLKD IIIIQNKIDL IQENEAIKQH 201: EDIQRFITNT NAEGAPIVPV SAQLKYNIDV LCEYIVKKIP LPVRDFVSPP RMIVIRSFDV NKPGSDYDGM KGGVAGGSIL QGVLKVGHII EIRPGITRKD 301: ENGDTKCTPI YTRITSLYAE QNELQFAVPG GLIGIGTSMD PTLTRGDRLV GQVLGEIGTL PDVYVELEVS FQLLTRLIGV KTKETERQMR VSKLVKGEIL 401: MLNIGSMSTG AMVIGVKKDM VKVNLTLPVC TSIGEKVAIS RRVDRHWRLI GRGQIEAGTT IFIPSPPSLA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)