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AT2G18690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.608
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF975 (InterPro:IPR010380); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18680.1); Has 213 Blast hits to 211 proteins in 20 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3JWeggNOG:ENOG410Z9KIEMBL:AC005724EMBL:CP002685EnsemblPlants:AT2G18690EnsemblPlants:AT2G18690.1entrez:816384
ExpressionAtlas:Q9ZV49GeneID:816384GO:GO:0016020GO:GO:0016021Gramene:AT2G18690.1hmmpanther:PTHR33133hmmpanther:PTHR33133:SF5
HOGENOM:HOG000015111OMA:ISSISYYPhylomeDB:Q9ZV49PIR:D84567Proteomes:UP000006548RefSeq:NP_028490.1STRING:3702.AT2G18690.1
TAIR:AT2G18690TMHMM:TMhelixUniGene:At.13212UniGene:At.67780UniProt:Q9ZV49
Coordinates (TAIR10) chr2:+:8097650..8098618
Molecular Weight (calculated) 36041.10 Da
IEP (calculated) 9.25
GRAVY (calculated) 0.88
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MARFSFLNVV KDVVAILNES RKLFLKNKKL MFSVLVFPLL LNCLVYFLNI FVIVPEITNL ILEASLLPST DPTSPEYAAR LMRVFTDFRQ FVGSSYIFAA
101: VSSIINLFSV LVIVHASAIT LKDENFNIKD FPVLSLKSWK GPLVTYFYIA LFSLGFGFLF FIILCPILLF SIKSGSVENI GFLAVEAGVL LIIFTVSQSY
201: FAIYWNLSMV ISILEESYGF QALGKAAKIV KGMKTKLFLL NLFFGLLASG LAQILQLINM GRSLAVTLTT GFVLVCLVFA VRMFQLVTYT VAYFQCKSLQ
301: GRDVESLRDV EYMALSSTTL TE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)