suba logo
AT2G18600.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.914
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin-conjugating enzyme family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin-conjugating enzyme family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity, acid-amino acid ligase activity, ATP binding; INVOLVED IN: regulation of protein metabolic process, protein modification process, post-translational protein modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); BEST Arabidopsis thaliana protein match is: RUB1 conjugating enzyme 1 (TAIR:AT4G36800.2); Has 8339 Blast hits to 8336 proteins in 387 species: Archae - 0; Bacteria - 2; Metazoa - 3796; Fungi - 1734; Plants - 1481; Viruses - 20; Other Eukaryotes - 1306 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G18600-MONOMEREC:6.3.2.-eggNOG:ENOG410XS81eggNOG:KOG0420EMBL:AC006135EMBL:BT003913EMBL:BT005005
EMBL:CP002685EnsemblPlants:AT2G18600EnsemblPlants:AT2G18600.1entrez:816375Gene3D:3.10.110.10GeneID:816375Genevisible:Q9ZU75
GO:GO:0005524GO:GO:0016874GO:GO:0045116Gramene:AT2G18600.1hmmpanther:PTHR24067hmmpanther:PTHR24067:SF123HOGENOM:HOG000233456
InParanoid:Q9ZU75InterPro:IPR000608InterPro:IPR016135InterPro:IPR023313KEGG:ath:AT2G18600KO:K10579OMA:QTSFPRC
PaxDb:Q9ZU75Pfam:PF00179Pfam:Q9ZU75Pfscan:PS50127PhylomeDB:Q9ZU75PIR:C84566PRIDE:Q9ZU75
PRO:PR:Q9ZU75PROSITE:PS00183PROSITE:PS50127ProteinModelPortal:Q9ZU75Proteomes:UP000006548RefSeq:NP_565440.1scanprosite:PS00183
SMR:Q9ZU75STRING:3702.AT2G18600.1SUPFAM:SSF54495TAIR:AT2G18600UniGene:At.39967unipathway:UPA00143UniPathway:UPA00885
UniProt:Q9ZU75
Coordinates (TAIR10) chr2:-:8073337..8074565
Molecular Weight (calculated) 21134.30 Da
IEP (calculated) 8.60
GRAVY (calculated) -0.57
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MIGLFKVKEK QREESQSNNG RGASTVKKQS AGELRLHKDI SELNLPKSCK ISFPNGKNDL MNFEVTIKPD EGYYLSGNFV FSFQVSNMYP HEAPKVKCKT
101: KVYHPNIDLE GNVCLNILRE DWKPVLNINT VIYGLFHLFT EPNYEDPLNH EAAAVLRDNP KTFEYNVRRA MMGGQVGQTS FPRCM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)