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AT2G18520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G36680.1); Has 27260 Blast hits to 10896 proteins in 232 species: Archae - 1; Bacteria - 5; Metazoa - 93; Fungi - 122; Plants - 26343; Viruses - 0; Other Eukaryotes - 696 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC006135EMBL:AY088617EMBL:CP002685EnsemblPlants:AT2G18520EnsemblPlants:AT2G18520.1
entrez:816367GeneID:816367Genevisible:Q9ZU67GO:GO:0005739GO:GO:0016020Gramene:AT2G18520.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF506HOGENOM:HOG000239281InParanoid:Q9ZU67InterPro:IPR002885iPTMnet:Q9ZU67KEGG:ath:AT2G18520OMA:CINGLYD
PaxDb:Q9ZU67Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:Q9ZU67Pfscan:PS51375PhylomeDB:Q9ZU67
PIR:C84565PRIDE:Q9ZU67PRO:PR:Q9ZU67PROSITE:PS51375ProteinModelPortal:Q9ZU67Proteomes:UP000006548RefSeq:NP_565439.1
SMR:Q9ZU67STRING:3702.AT2G18520.1TAIR:AT2G18520TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.64940UniProt:Q9ZU67
Coordinates (TAIR10) chr2:-:8034036..8035292
Molecular Weight (calculated) 47330.30 Da
IEP (calculated) 9.26
GRAVY (calculated) -0.37
Length 418 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSSRLYLRF LRRFSTATGI DSQTTAYPGA ITMSKAKSKL RKVQDPDKAL AIYKSVSNNS TSPLSSRYAM ELTVQRLAKS QRFSDIEALI ESHKNNPKIK
101: TETFLSTLIR SYGRASMFDH AMKMFEEMDK LGTPRTVVSF NALLAACLHS DLFERVPQLF DEFPQRYNNI TPDKISYGML IKSYCDSGKP EKAMEIMRDM
201: EVKGVEVTII AFTTILGSLY KNGLVDEAES LWIEMVNKGC DLDNTVYNVR LMNAAKESPE RVKELMEEMS SVGLKPDTVS YNYLMTAYCV KGMMSEAKKV
301: YEGLEQPNAA TFRTLIFHLC INGLYDQGLT VFKKSAIVHK IPDFKTCKHL TEGLVKNNRM EDARGVARIV KKKFPPRLVT EWKKLEEKLG LYSKGNAAAV
401: SSSSQTREVL DQEREDDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)