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AT2G18510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2444 (emb2444); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 8 (TAIR:AT1G49760.2); Has 66829 Blast hits to 41224 proteins in 1633 species: Archae - 50; Bacteria - 5635; Metazoa - 30219; Fungi - 10282; Plants - 12025; Viruses - 917; Other Eukaryotes - 7701 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPT4eggNOG:KOG0131EMBL:AC006135EMBL:AY150466EMBL:CP002685EnsemblPlants:AT2G18510EnsemblPlants:AT2G18510.1
entrez:816366Gene3D:3.30.70.330GeneID:816366GO:GO:0000166GO:GO:0003676GO:GO:0005730Gramene:AT2G18510.1
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF449InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT2G18510KO:K12831OMA:DRISMSH
Pfam:PF00076Pfscan:PS50102PhylomeDB:Q9ZU66PIR:B84565PROSITE:PS50102Proteomes:UP000006548Reactome:R-ATH-72163
Reactome:R-ATH-72165RefSeq:NP_179441.1SMART:SM00360SMR:Q9ZU66STRING:3702.AT2G18510.1SUPFAM:SSF54928TAIR:AT2G18510
tair10-symbols:emb2444UniGene:At.20306UniProt:Q9ZU66
Coordinates (TAIR10) chr2:-:8031554..8033517
Molecular Weight (calculated) 39890.30 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.73
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)