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AT2G18380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GATA transcription factor 20
Curator
Summary (TAIR10)
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational
Description (TAIR10)
GATA transcription factor 20 (GATA20); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 19 (TAIR:AT4G36620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:1710eggNOG:COG5641eggNOG:KOG1601EMBL:AB493551EMBL:AC006439EMBL:BT029505EMBL:CP002685
EnsemblPlants:AT2G18380EnsemblPlants:AT2G18380.1entrez:816353Gene3D:3.30.50.10GeneID:816353Genevisible:Q9ZPX0GO:GO:0000977
GO:GO:0001085GO:GO:0001228GO:GO:0003682GO:GO:0003700GO:GO:0005634GO:GO:0005667GO:GO:0006366
GO:GO:0008270GO:GO:0030154GO:GO:0044212GO:GO:0045944Gramene:AT2G18380.1hmmpanther:PTHR10071hmmpanther:PTHR10071:SF156
HOGENOM:HOG000238145InParanoid:Q9ZPX0InterPro:IPR000679InterPro:IPR013088KEGG:ath:AT2G18380OMA:NFSMFFSPaxDb:Q9ZPX0
Pfam:PF00320Pfam:Q9ZPX0Pfscan:PS50114PIR:F84563PRO:PR:Q9ZPX0PROSITE:PS00344PROSITE:PS50114
ProteinModelPortal:Q9ZPX0Proteomes:UP000006548RefSeq:NP_179429.2scanprosite:PS00344SMART:SM00401SMR:Q9ZPX0STRING:3702.AT2G18380.1
SUPFAM:SSF57716TAIR:AT2G18380tair10-symbols:GATA20UniGene:At.52803UniProt:Q9ZPX0
Coordinates (TAIR10) chr2:-:7982868..7984017
Molecular Weight (calculated) 23028.10 Da
IEP (calculated) 7.96
GRAVY (calculated) -0.88
Length 208 amino acids
Sequence (TAIR10)
(BLAST)
001: MMGYQTNSNF SMFFSSENDD QNHHNYDPYN NFSSSTSVDC TLSLGTPSTR LDDHHRFSSA NSNNISGDFY IHGGNAKTSS YKKGGVAHSL PRRCASCDTT
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)