suba logo
AT2G18370.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, embryo, hypocotyl, male gametophyte, root; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 6 (TAIR:AT3G08770.1); Has 1059 Blast hits to 1058 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1055; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3MPeggNOG:ENOG41118KKEMBL:AC006439EMBL:AK229548EMBL:AY084369EMBL:CP002685EnsemblPlants:AT2G18370
EnsemblPlants:AT2G18370.1entrez:816352GeneID:816352Genevisible:Q9ZPW9GO:GO:0006869GO:GO:0008289Gramene:AT2G18370.1
hmmpanther:PTHR33076hmmpanther:PTHR33076:SF4HOGENOM:HOG000237659InParanoid:Q9ZPW9InterPro:IPR000528InterPro:IPR016140KEGG:ath:AT2G18370
OMA:QCIKSVAPaxDb:Q9ZPW9Pfam:PF00234Pfam:Q9ZPW9PhylomeDB:Q9ZPW9PIR:E84563PRIDE:Q9ZPW9
PRINTS:PR00382PRO:PR:Q9ZPW9ProteinModelPortal:Q9ZPW9Proteomes:UP000006548RefSeq:NP_179428.1SMART:SM00499SMR:Q9ZPW9
STRING:3702.AT2G18370.1SUPFAM:SSF47699TAIR:AT2G18370UniGene:At.40006UniProt:Q9ZPW9
Coordinates (TAIR10) chr2:+:7980687..7981475
Molecular Weight (calculated) 11789.20 Da
IEP (calculated) 4.85
GRAVY (calculated) 0.45
Length 116 amino acids
Sequence (TAIR10)
(BLAST)
001: MNVLKCLAII SVLGIFFIPR YSESAISCSV VLQDLQPCVS YLTSGSGNPP ETCCDGVKSL AAATTTSADK KAACQCIKSV ANSVTVKPEL AQALASNCGA
101: SLPVDASPTV DCTTVG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)