AT2G18240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.500 golgi 0.500 ASURE: endoplasmic reticulum,golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rer1 family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Rer1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: endoplasmatic reticulum retrieval protein 1B (TAIR:AT2G21600.1); Has 511 Blast hits to 511 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 148; Plants - 128; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:7935466..7936464 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 25731.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.32 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||||||||||
| Length | 221 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDEPGSENE ADTIVASPLA KWRIEFSKSF QNYLDRSAPN IVRRWLVTLV AAVIYIYRVY SVYGYFVISY GLATYILNLL IGFLSPKVDP ELEALDPDSL 101: PVDESDEYKP FVRRLPEFKF WYAATKAFVV AFVMTFFSFL DVPVFWPILL CYWLVLYSLT MKRLIVHMFK YRYFPFDVRK PVKLLKFLVN SVLTFLRLKK 201: GDGGDDRPSS SNSSQGNEKQ D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)