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AT2G18090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), SWIB/MDM2 domain (InterPro:IPR003121), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), GYF (InterPro:IPR003169), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (TAIR:AT3G51120.1); Has 1270 Blast hits to 1121 proteins in 190 species: Archae - 0; Bacteria - 166; Metazoa - 513; Fungi - 60; Plants - 433; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41119ATeggNOG:KOG1081eggNOG:KOG1862eggNOG:KOG1946EMBL:AF370586EMBL:CP002685EnsemblPlants:AT2G18090
EnsemblPlants:AT2G18090.1entrez:816321Gene3D:1.10.245.10Gene3D:3.30.1490.40Gene3D:3.30.40.10GeneID:816321GO:GO:0008270
Gramene:AT2G18090.1hmmpanther:PTHR22884hmmpanther:PTHR22884:SF339HOGENOM:HOG000151186InterPro:IPR001965InterPro:IPR003121InterPro:IPR003169
InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786InterPro:IPR019787InterPro:IPR019835KEGG:ath:AT2G18090OMA:IRHSIND
Pfam:PF02201Pfam:PF02213Pfscan:PS50016Pfscan:PS50829PhylomeDB:Q94JX1PROSITE:PS01359PROSITE:PS50016
PROSITE:PS50829Proteomes:UP000006548RefSeq:NP_849971.1scanprosite:PS01359SMART:SM00151SMART:SM00249SMART:SM00444
SMR:Q94JX1STRING:3702.AT2G18090.1SUPFAM:SSF47592SUPFAM:SSF55277SUPFAM:SSF57903TAIR:AT2G18090UniGene:At.13556
UniProt:Q94JX1
Coordinates (TAIR10) chr2:+:7864501..7867317
Molecular Weight (calculated) 91133.40 Da
IEP (calculated) 6.38
GRAVY (calculated) -0.55
Length 824 amino acids
Sequence (TAIR10)
(BLAST)
001: MPEIDLMRVD HCVSDVKLDD SSSSPPGFFD GGGVPLDSDV KLDEEDSDSL KKRGRRGRPP RILAKASSPP ISRKRREDED VCFVCFDGGS LVLCDRRGCP
101: KAYHPACVKR TEAFFRSRSK WNCGWHICTT CQKDSFYMCY TCPYSVCKRC VRSSEYVVVR ENKGFCGICM KTIMLIENAA EANKEKVQVD FDDQGSWEYL
201: FKIYWVSLKE KLGLSLDDLT KAKNPWKSSS STAAKRRTTS RVHEKDDGNS PGVMKIRRAK VRKMDAVSVS NLGPSLDSNC SLGDRLPQLT SAATWATNEL
301: LDFVGYMKNG DISVLSKYDV QTLVLEYVRR NNLQNSPQNS EIMCDSKLMR LFGKERVDNL EMLKLLDSHF IDQVRSPVTD NSAGGVTETM SYQVNAGRSC
401: DRLNTSEQHQ EGESQQLNGH SIQVRPSSSD SRNHAVVKPD TSATLSNKPI DGLDTNMVWL YGDPDGKIHG PFSLYNLRQW NSSGHFPPEL RIWRLGEQQH
501: SSILLTDALN GQFHKTGLLQ NHSIPKQEVT ATIANDQNRS VAVPKIESRI LDFSPNSVCT DQSVISSSNS VITRSSDVSN KSGNNCSHAV PLDFSLSNER
601: DTVGFISLWD KRKVESSLLV QSPISCSLSL ATLPRNSNCS LPPHERWSAG QTDGNSAATT ACNQNGSLSG SAEKQVTATV QSCGQNWNAA TPSSASNVWD
701: SNSGLTSFPD NQEIDFLDLF SPTFKFNFAS TTTDWQPIVA GPDECDESVS DLLAEVEAME SQKRLPSPTS TFRGPEELLI RHSINDSFSP AEGHSPALDV
801: SKGDSMSSTN DLQMHSRSNS TVHF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)